Class SingleCellDataSample

java.lang.Object

ubic.gemma.core.loader.expression.singleCell.transform.AbstractScriptBasedTransformation

ubic.gemma.core.loader.expression.singleCell.transform.AbstractPythonScriptBasedTransformation

ubic.gemma.core.loader.expression.singleCell.transform.AbstractPythonScriptBasedAnnDataTransformation

ubic.gemma.core.loader.expression.singleCell.transform.SingleCellDataSample

All Implemented Interfaces:

PythonBasedSingleCellDataTransformation, SingleCellDataTransformation, SingleCellInputOutputFileTransformation

public class SingleCellDataSample
extends AbstractPythonScriptBasedAnnDataTransformation

Field Summary

Fields inherited from class AbstractScriptBasedTransformation

log

Fields inherited from interface PythonBasedSingleCellDataTransformation

DEFAULT_PYTHON_EXECUTABLE, REQUIREMENTS_FILE

Constructor Summary

Constructors

Constructor	Description
SingleCellDataSample()

Method Summary

Modifier and Type	Method	Description
protected String[]	createPythonScriptArgs()
String	getDescription()	Obtain a short description of what the transformation does.
void	setNumberOfCellIds(int numberOfCellIds)
void	setNumberOfGenes(int numberOfGenes)

Methods inherited from class AbstractPythonScriptBasedAnnDataTransformation

createEnvironmentVariables, setInputFile, setOutputFile

Methods inherited from class AbstractPythonScriptBasedTransformation

createErrorMessage, createScriptArgs, isPackageInstalled, perform, setPythonExecutable

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface SingleCellDataTransformation

perform

Constructor Details

SingleCellDataSample

public SingleCellDataSample()

Method Details

createPythonScriptArgs

protected String[] createPythonScriptArgs()

Overrides:

createPythonScriptArgs in class AbstractPythonScriptBasedAnnDataTransformation

getDescription

public String getDescription()

Description copied from interface: SingleCellDataTransformation

Obtain a short description of what the transformation does.

setNumberOfCellIds

public void setNumberOfCellIds(int numberOfCellIds)

setNumberOfGenes

public void setNumberOfGenes(int numberOfGenes)