Package ubic.gemma.core.loader.expression.singleCell.transform

Class SingleCellDataSample

java.lang.Object

ubic.gemma.core.loader.expression.singleCell.transform.AbstractScriptBasedTransformation

ubic.gemma.core.loader.expression.singleCell.transform.AbstractPythonScriptBasedTransformation

ubic.gemma.core.loader.expression.singleCell.transform.AbstractPythonScriptBasedAnnDataTransformation

ubic.gemma.core.loader.expression.singleCell.transform.SingleCellDataSample

All Implemented Interfaces:

PythonBasedSingleCellDataTransformation, SingleCellDataTransformation, SingleCellInputOutputFileTransformation

public class SingleCellDataSample
extends AbstractPythonScriptBasedAnnDataTransformation

Field Summary

Fields inherited from class ubic.gemma.core.loader.expression.singleCell.transform.AbstractScriptBasedTransformation

log

Fields inherited from interface ubic.gemma.core.loader.expression.singleCell.transform.PythonBasedSingleCellDataTransformation

DEFAULT_PYTHON_EXECUTABLE, REQUIREMENTS_FILE

Constructor Summary

Constructors

Constructor	Description
SingleCellDataSample()

Method Summary

Modifier and Type	Method	Description
protected String[]	createPythonScriptArgs()
String	getDescription()	Obtain a short description of what the transformation does.
void	setNumberOfCellIds(int numberOfCellIds)
void	setNumberOfGenes(int numberOfGenes)

Methods inherited from class ubic.gemma.core.loader.expression.singleCell.transform.AbstractPythonScriptBasedAnnDataTransformation

createEnvironmentVariables, setInputFile, setOutputFile

Methods inherited from class ubic.gemma.core.loader.expression.singleCell.transform.AbstractPythonScriptBasedTransformation

createErrorMessage, createScriptArgs, isPackageInstalled, perform, setPythonExecutable

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.core.loader.expression.singleCell.transform.SingleCellDataTransformation

perform

Constructor Details

SingleCellDataSample

public SingleCellDataSample()

Method Details

createPythonScriptArgs

protected String[] createPythonScriptArgs()

Overrides:

createPythonScriptArgs in class AbstractPythonScriptBasedAnnDataTransformation

getDescription

public String getDescription()

Description copied from interface: SingleCellDataTransformation

Obtain a short description of what the transformation does.

setNumberOfCellIds

public void setNumberOfCellIds(int numberOfCellIds)

setNumberOfGenes

public void setNumberOfGenes(int numberOfGenes)