Package ubic.gemma.core.loader.genome

Interface Summary

Interface	Description
FastaCmd	Interface representing a class that can retrieve sequences from Blast databases.

Class Summary

Class	Description
BlatResultParser	Loader to handle results generated by Jim Kent's Blat.
FastaParser	FASTA sequence file parser.
ProbeSequenceParser	Parse probes from a tabular file.
SimpleFastaCmd	Simple implementation of methods for fetching sequences from blast-formatted databases, using blastdbcmd (aka fastacmd)