Package ubic.gemma.core.loader.util

Class GenBankUtils

java.lang.Object

ubic.gemma.core.loader.util.GenBankUtils

@Component
public class GenBankUtils
extends Object

Provides convenience methods for GenBank.

Author:

pavlidis

Constructor Summary

Constructors

Constructor	Description
GenBankUtils()

Method Summary

Modifier and Type	Method	Description
static ExternalDatabase	getGenBank()
static DatabaseEntry	getGenBankAccession(String accession)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

GenBankUtils

public GenBankUtils()

Method Details

getGenBank

public static ExternalDatabase getGenBank()

Returns:

a transient instance of the GenBank database reference.

getGenBankAccession

public static DatabaseEntry getGenBankAccession(String accession)

Parameters:

accession - in the form XXXXXX or XXXXX.N where N is a version number. The first part becomes the accession, the second the version

Returns:

a DatabaseEntry representing the genbank accession.