Package ubic.gemma.core.loader.util.hdf5

Class H5Location

java.lang.Object

ubic.gemma.core.loader.util.hdf5.H5Location

Direct Known Subclasses:

H5File, H5Group

public abstract class H5Location
extends Object

Represents a location which is either a H5File or a H5Group.

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	H5Location(long locId)

Method Summary

Modifier and Type	Method	Description
boolean	exists(String path)	Check if a given path exists relative to this location.
Optional<H5Attribute>	getAttribute(String name)
Optional<H5Attribute>	getAttribute(String path, String name)
List<String>	getAttributes()
List<String>	getAttributes(String path)
List<String>	getChildren()	Obtain the children of the given H5 location.
List<String>	getChildren(String path)
H5Dataset	getDataset(String path)
H5Group	getGroup(String path)
String	getStringAttribute(String name)
String	getStringAttribute(String path, String name)	Obtain an attribute for a given path.
boolean	hasAttribute(String name)	Check if an attribute exists.
boolean	hasAttribute(String path, String name)	Check if an attribute for a given path exists.
boolean	isGroup(String path)	Check if the given path refers to a H5 group.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

H5Location

protected H5Location(long locId)

Method Detail

getAttributes

public List<String> getAttributes()

getAttributes

public List<String> getAttributes(String path)

getAttribute

public Optional<H5Attribute> getAttribute(String name)

getAttribute

public Optional<H5Attribute> getAttribute(String path,
                                          String name)

getStringAttribute

@Nullable
public String getStringAttribute(String name)

getStringAttribute

@Nullable
public String getStringAttribute(String path,
                                 String name)

Obtain an attribute for a given path.

hasAttribute

public boolean hasAttribute(String name)

Check if an attribute exists.

hasAttribute

public boolean hasAttribute(String path,
                            String name)

Check if an attribute for a given path exists.

exists

public boolean exists(String path)

Check if a given path exists relative to this location.

getChildren

public List<String> getChildren()

Obtain the children of the given H5 location.

getChildren

public List<String> getChildren(String path)

isGroup

public boolean isGroup(String path)

Check if the given path refers to a H5 group.

getGroup

public H5Group getGroup(String path)

getDataset

public H5Dataset getDataset(String path)