Package ubic.gemma.core.ontology

Class ValueStringToOntologyMapping

java.lang.Object

ubic.gemma.core.ontology.ValueStringToOntologyMapping

public class ValueStringToOntologyMapping
extends Object

Attempt to identify a preset value (ontology term) for certain strings found in GEO data sets and other places.

The presets are stored in valueStringToOntologyTermMappings.txt.

Constructor Summary

Constructors

Constructor	Description
ValueStringToOntologyMapping()

Method Summary

Modifier and Type	Method	Description
static Collection<Characteristic>	lookup(String value)	Lookup a value across all categories.
static Characteristic	lookup(String value, String category)	Lookup a value for a given category.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ValueStringToOntologyMapping

public ValueStringToOntologyMapping()

Method Detail

lookup

@Nullable
public static Characteristic lookup(String value,
                                    String category)

Lookup a value for a given category.

lookup

public static Collection<Characteristic> lookup(String value)

Lookup a value across all categories.