Package ubic.gemma.core.tasks.analysis.diffex

Class DifferentialExpressionAnalysisTaskCommand

java.lang.Object
ubic.gemma.core.job.TaskCommand
ubic.gemma.core.tasks.analysis.diffex.DifferentialExpressionAnalysisTaskCommand
All Implemented Interfaces:
Serializable
Direct Known Subclasses:
DifferentialExpressionAnalysisRemoveTaskCommand
public class DifferentialExpressionAnalysisTaskCommand extends TaskCommand
A command object to be used by spaces.
Author:
keshav
See Also:

  • Constructor Details

  • Method Details

    • getAnalysisType

      public AnalysisType getAnalysisType()

    • setAnalysisType

      public void setAnalysisType(AnalysisType analysisType)

    • getExpressionExperiment

      public ExpressionExperiment getExpressionExperiment()

    • setExpressionExperiment

      public void setExpressionExperiment(ExpressionExperiment expressionExperiment)

    • getFactors

      public Collection<ExperimentalFactor> getFactors()

    • setFactors

      public void setFactors(Collection<ExperimentalFactor> factors)

    • getSubsetFactor

      public ExperimentalFactor getSubsetFactor()
      Returns:
      the subsetFactor

    • setSubsetFactor

      public void setSubsetFactor(ExperimentalFactor subsetFactor)
      Parameters:
      subsetFactor - the subsetFactor to set

    • getTaskClass

      public Class<? extends Task<? extends TaskCommand>> getTaskClass()
      Description copied from class: TaskCommand
      Obtain the class of the Task object that will be run for this command.

      If null, the task command cannot be submitted through TaskRunningService.submitTaskCommand(TaskCommand) and a task object must be explicitly created.

      For now, this how we map from TaskCommand to Task that actually runs it. We have to have this mapping somewhere until we make Tasks themselves serializable. Tasks are not readily serializable because they have dependencies to Spring services. at which point TaskCommand can be deprecated(or remain as TaskContext).

      Overrides:
      getTaskClass in class TaskCommand

    • getToRedo

      public DifferentialExpressionAnalysis getToRedo()

    • setToRedo

      public void setToRedo(DifferentialExpressionAnalysis toRedo)

    • isForceAnalysis

      public boolean isForceAnalysis()

    • setForceAnalysis

      public void setForceAnalysis(boolean forceAnalysis)

    • isIncludeInteractions

      public boolean isIncludeInteractions()

    • setIncludeInteractions

      public void setIncludeInteractions(boolean includeInteractions)
      Parameters:
      includeInteractions - Sets preference for interactions to be included.

    • isModerateStatistics

      public boolean isModerateStatistics()

    • setModerateStatistics

      public void setModerateStatistics(boolean moderateStatistics)

    • isUseWeights

      public boolean isUseWeights()

    • setUseWeights

      public void setUseWeights(boolean useWeights)