Package ubic.gemma.core.tasks.visualization

Class DifferentialExpressionAnalysisResultSetVisualizationValueObject

java.lang.Object
ubic.gemma.core.tasks.visualization.DifferentialExpressionAnalysisResultSetVisualizationValueObject
All Implemented Interfaces:
Serializable
@ValueObject public class DifferentialExpressionAnalysisResultSetVisualizationValueObject extends Object implements Serializable
This class contains data for a column in metaheatmap visualization.
See Also:

  • Constructor Details

    • DifferentialExpressionAnalysisResultSetVisualizationValueObject

      public DifferentialExpressionAnalysisResultSetVisualizationValueObject()

    • DifferentialExpressionAnalysisResultSetVisualizationValueObject

      public DifferentialExpressionAnalysisResultSetVisualizationValueObject(int[] geneGroupSizes)

  • Method Details

    • addContrastsFactorValue

      public void addContrastsFactorValue(long factorValueId, String factorValueName)

    • getAnalysisId

      public Long getAnalysisId()

    • setAnalysisId

      public void setAnalysisId(Long analysisId)

    • getAnalysisNotRun

      public boolean getAnalysisNotRun()

    • setAnalysisNotRun

      public void setAnalysisNotRun(boolean analysisNotRun)

    • getBaselineFactorValue

      public String getBaselineFactorValue()

    • setBaselineFactorValue

      public void setBaselineFactorValue(String baselineFactorValue)

    • getBaselineFactorValueId

      public Long getBaselineFactorValueId()

    • setBaselineFactorValueId

      public void setBaselineFactorValueId(Long baselineFactorValueId)

    • getContrastsFactorValueIds

      public List<Long> getContrastsFactorValueIds()

    • getContrastsFactorValues

      public Map<Long,String> getContrastsFactorValues()

    • setContrastsFactorValues

      public void setContrastsFactorValues(Map<Long,String> contrastsFactorValues)

    • getDatasetId

      public Long getDatasetId()

    • setDatasetId

      public void setDatasetId(Long datasetId)

    • getDatasetLink

      public String getDatasetLink()

    • setDatasetLink

      public void setDatasetLink(String datasetLink)

    • getDatasetName

      public String getDatasetName()

    • setDatasetName

      public void setDatasetName(String datasetName)

    • getDatasetShortName

      public String getDatasetShortName()

    • setDatasetShortName

      public void setDatasetShortName(String datasetShortName)

    • getFactorCategory

      public String getFactorCategory()

    • setFactorCategory

      public void setFactorCategory(String name)

    • getFactorDescription

      public String getFactorDescription()

    • setFactorDescription

      public void setFactorDescription(String factorDescription)

    • getFactorId

      public Long getFactorId()

    • setFactorId

      public void setFactorId(Long factorId)

    • getFactorName

      public String getFactorName()

    • setFactorName

      public void setFactorName(String factorName)

    • getNumberOfProbes

      public List<List<Integer>> getNumberOfProbes()

    • setNumberOfProbes

      public void setNumberOfProbes(List<List<Integer>> numberOfProbes)

    • getNumberOfProbesDiffExpressed

      public int getNumberOfProbesDiffExpressed()

    • setNumberOfProbesDiffExpressed

      public void setNumberOfProbesDiffExpressed(int numberOfProbesDiffExpressed)

    • getNumberOfProbesDownRegulated

      public int getNumberOfProbesDownRegulated()

    • setNumberOfProbesDownRegulated

      public void setNumberOfProbesDownRegulated(int numberOfProbesDownRegulated)

    • getNumberOfProbesTotal

      public int getNumberOfProbesTotal()

    • setNumberOfProbesTotal

      public void setNumberOfProbesTotal(int numberOfProbesTotal)

    • getNumberOfProbesUpRegulated

      public int getNumberOfProbesUpRegulated()

    • setNumberOfProbesUpRegulated

      public void setNumberOfProbesUpRegulated(int numberOfProbesUpRegulated)

    • getqValues

      public List<List<Double>> getqValues()

    • setqValues

      public void setqValues(List<List<Double>> qValues)

    • getResultSetId

      public Long getResultSetId()

    • setResultSetId

      public void setResultSetId(Long resultSetId)

    • getVisualizationValues

      public List<List<Double>> getVisualizationValues()

    • setVisualizationValues

      public void setVisualizationValues(List<List<Double>> visualizationValues)

    • setNumberOfProbes

      public void setNumberOfProbes(int geneGroupIndex, int geneIndex, Integer numberOfProbes)

    • setQvalue

      public void setQvalue(int geneGroupIndex, int geneIndex, Double qValue)

    • setVisualizationValue

      public void setVisualizationValue(int geneGroupIndex, int geneIndex, Double value)

    • toText

      public String toText()