Class DifferentialExpressionAnalysisResultSetVisualizationValueObject

    • Constructor Detail

      • DifferentialExpressionAnalysisResultSetVisualizationValueObject

        public DifferentialExpressionAnalysisResultSetVisualizationValueObject()
      • DifferentialExpressionAnalysisResultSetVisualizationValueObject

        public DifferentialExpressionAnalysisResultSetVisualizationValueObject​(int[] geneGroupSizes)
    • Method Detail

      • addContrastsFactorValue

        public void addContrastsFactorValue​(long factorValueId,
                                            String factorValueName)
      • getAnalysisId

        public Long getAnalysisId()
      • setAnalysisId

        public void setAnalysisId​(Long analysisId)
      • getAnalysisNotRun

        public boolean getAnalysisNotRun()
      • setAnalysisNotRun

        public void setAnalysisNotRun​(boolean analysisNotRun)
      • getBaselineFactorValue

        public String getBaselineFactorValue()
      • setBaselineFactorValue

        public void setBaselineFactorValue​(String baselineFactorValue)
      • getBaselineFactorValueId

        public Long getBaselineFactorValueId()
      • setBaselineFactorValueId

        public void setBaselineFactorValueId​(Long baselineFactorValueId)
      • getContrastsFactorValueIds

        public List<Long> getContrastsFactorValueIds()
      • getContrastsFactorValues

        public Map<Long,​String> getContrastsFactorValues()
      • setContrastsFactorValues

        public void setContrastsFactorValues​(Map<Long,​String> contrastsFactorValues)
      • getDatasetId

        public Long getDatasetId()
      • setDatasetId

        public void setDatasetId​(Long datasetId)
      • getDatasetLink

        public String getDatasetLink()
      • setDatasetLink

        public void setDatasetLink​(String datasetLink)
      • getDatasetName

        public String getDatasetName()
      • setDatasetName

        public void setDatasetName​(String datasetName)
      • getDatasetShortName

        public String getDatasetShortName()
      • setDatasetShortName

        public void setDatasetShortName​(String datasetShortName)
      • getFactorCategory

        public String getFactorCategory()
      • setFactorCategory

        public void setFactorCategory​(String name)
      • getFactorDescription

        public String getFactorDescription()
      • setFactorDescription

        public void setFactorDescription​(String factorDescription)
      • getFactorId

        public Long getFactorId()
      • setFactorId

        public void setFactorId​(Long factorId)
      • getFactorName

        public String getFactorName()
      • setFactorName

        public void setFactorName​(String factorName)
      • setNumberOfProbes

        public void setNumberOfProbes​(List<List<Integer>> numberOfProbes)
      • getNumberOfProbesDiffExpressed

        public int getNumberOfProbesDiffExpressed()
      • setNumberOfProbesDiffExpressed

        public void setNumberOfProbesDiffExpressed​(int numberOfProbesDiffExpressed)
      • getNumberOfProbesDownRegulated

        public int getNumberOfProbesDownRegulated()
      • setNumberOfProbesDownRegulated

        public void setNumberOfProbesDownRegulated​(int numberOfProbesDownRegulated)
      • getNumberOfProbesTotal

        public int getNumberOfProbesTotal()
      • setNumberOfProbesTotal

        public void setNumberOfProbesTotal​(int numberOfProbesTotal)
      • getNumberOfProbesUpRegulated

        public int getNumberOfProbesUpRegulated()
      • setNumberOfProbesUpRegulated

        public void setNumberOfProbesUpRegulated​(int numberOfProbesUpRegulated)
      • getResultSetId

        public Long getResultSetId()
      • setResultSetId

        public void setResultSetId​(Long resultSetId)
      • getVisualizationValues

        public List<List<Double>> getVisualizationValues()
      • setVisualizationValues

        public void setVisualizationValues​(List<List<Double>> visualizationValues)
      • setNumberOfProbes

        public void setNumberOfProbes​(int geneGroupIndex,
                                      int geneIndex,
                                      Integer numberOfProbes)
      • setQvalue

        public void setQvalue​(int geneGroupIndex,
                              int geneIndex,
                              Double qValue)
      • setVisualizationValue

        public void setVisualizationValue​(int geneGroupIndex,
                                          int geneIndex,
                                          Double value)
      • toText

        public String toText()