Package ubic.gemma.core.util.math

package ubic.gemma.core.util.math

Related Packages

Package	Description
ubic.gemma.core.util
ubic.gemma.core.util.math.distribution
ubic.gemma.core.util.math.linalg
ubic.gemma.core.util.math.linearmodels
ubic.gemma.core.util.math.metaanalysis
ubic.gemma.core.util.concurrent
ubic.gemma.core.util.graphics
ubic.gemma.core.util.locking	Utilities for locking files.
ubic.gemma.core.util.matrix	Labelled-axis matrix types ported in-tree from baseCode's ubic.basecode.dataStructure.matrix subsystem as part of the Phase 3 baseCode retirement (see BASECODE_MATRIX_RECCE.md and BASECODE_DEP_AUDIT.md).
ubic.gemma.core.util.runtime	Utilities for accessing extended runtime information.

Classes

Class	Description
Constants	Numeric constants used in some ports of statistical code.
CorrelationStats	Statistical evaluation and transformation tools for correlations.
DescriptiveWithMissing	Mathematical functions for statistics that allow missing values without scotching the calculations.
Distance	Alternative distance and similarity metrics for vectors.
KruskalWallis	Perform a Kruskal-Wallis test.
MathUtil	Small numeric helpers.
MatrixNormalizer<R,C>
MatrixRowStats	Convenience functions for getting row statistics from matrices.
MatrixStats
MultipleTestCorrection	Methods for p-value correction of sets of hypothesis tests.
Rank	Calculate rank statistics for arrays.
Smooth	Methods for moving averages, loess
SpecFunc	Assorted special functions, primarily concerning probability distributions.
Stats	Miscellaneous functions used for statistical analysis.
StringDistance	String distance metrics (Levenshtein edit distance and prefix/suffix weighted Hamming variants).