Package ubic.gemma.core.visualization

Interface ExperimentalDesignVisualizationService

All Known Implementing Classes:
ExperimentalDesignVisualizationServiceImpl
public interface ExperimentalDesignVisualizationService
Author:
Paul

  • Method Details

    • sortVectorDataByDesign

      Map<Long,LinkedHashMap<BioAssayValueObject,LinkedHashMap<ExperimentalFactor,Double>>> sortVectorDataByDesign(Collection<DoubleVectorValueObject> dedVs, @Nullable ExperimentalFactor primaryFactor)
      Put data vectors in the order you'd want to display the experimental design. This causes the "isReorganized" flag of the dedVs to be set to true.
      Parameters:
      dedVs - dedVs, already sliced for the subset of samples needed for display (if necessary); will be modified
      primaryFactor - if non-null this factor will be used to order the data, otherwise the first factor will be chosen using built-in heuristics. Set this to ensure that the data is ordered by the factor you want as in the case of showing DE genes
      Returns:
      Map of EE ids to "layouts", which are Maps of BioAssays to map of experimental factors to doubles.