Uses of Class
ubic.gemma.model.analysis.expression.coexpression.SampleCoexpressionMatrix

Packages that use SampleCoexpressionMatrix

Package	Description
ubic.gemma.model.analysis.expression.coexpression
ubic.gemma.persistence.service.analysis.expression.sampleCoexpression

Uses of SampleCoexpressionMatrix in ubic.gemma.model.analysis.expression.coexpression

Methods in ubic.gemma.model.analysis.expression.coexpression that return SampleCoexpressionMatrix

Modifier and Type	Method	Description
SampleCoexpressionMatrix	SampleCoexpressionAnalysis.getBestCoexpressionMatrix()
SampleCoexpressionMatrix	SampleCoexpressionAnalysis.getFullCoexpressionMatrix()	Note that since you get a full square matrix, all correlations are represented twice, and values on the main diagonal will always be 1.
SampleCoexpressionMatrix	SampleCoexpressionAnalysis.getRegressedCoexpressionMatrix()	Note that since you get a full square matrix, all correlations are represented twice, and values on the main diagonal will always be 1.

Methods in ubic.gemma.model.analysis.expression.coexpression with parameters of type SampleCoexpressionMatrix

Modifier and Type	Method	Description
void	SampleCoexpressionAnalysis.setFullCoexpressionMatrix(SampleCoexpressionMatrix rawFullCoexpressionMatrix)
void	SampleCoexpressionAnalysis.setRegressedCoexpressionMatrix(SampleCoexpressionMatrix regressedCoexpressionMatrix)

Constructors in ubic.gemma.model.analysis.expression.coexpression with parameters of type SampleCoexpressionMatrix

Constructor	Description
SampleCoexpressionAnalysis(BioAssaySet experimentAnalyzed, SampleCoexpressionMatrix fullCoexpressionMatrix, SampleCoexpressionMatrix regressedCoexpressionMatrix)

Uses of SampleCoexpressionMatrix in ubic.gemma.persistence.service.analysis.expression.sampleCoexpression

Constructors in ubic.gemma.persistence.service.analysis.expression.sampleCoexpression with parameters of type SampleCoexpressionMatrix

Constructor	Description
PreparedCoexMatrices(SampleCoexpressionMatrix matrix, SampleCoexpressionMatrix regressedMatrix)