Package ubic.gemma.model.association
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Class Summary Class Description BioSequence2GeneProduct An association between a BioSequence and a Gene Product.Gene2GeneAssociation Entity representing a relationship between two genes.Gene2GeneIdAssociation Entity representing a relationship between two genes identified by ID, rather than by the Gene entity (for efficiency reasons).Gene2GOAssociation Gene2GOAssociation.Factory ReferenceAssociation An association between a BioSequence and a GeneProduct based on external database identifiers.ReferenceAssociation.Factory -
Enum Summary Enum Description GOEvidenceCode This enumeration was originally based on GO, but is used for all entities that have evidenciary aspects; Thus it has been expanded to include: Terms from RGD (rat genome database) IED = Inferred from experimental data IAGP = Inferred from association of genotype and phenotype IPM = Inferred from phenotype manipulation QTM = Quantitative Trait Measurement And our own custom code IIA which means Inferred from Imported Annotation to distinguish IEAs that we ourselves have computed See https://geneontology.org/docs/guide-go-evidence-codes/ for documentation of GO evidence codes.