Uses of Package
ubic.gemma.model.association

Packages that use ubic.gemma.model.association

Package	Description
ubic.gemma.core.goldenpath
ubic.gemma.core.loader.association
ubic.gemma.model.association
ubic.gemma.model.association.coexpression
ubic.gemma.model.common.description
ubic.gemma.model.genome.biosequence
ubic.gemma.model.genome.sequenceAnalysis
ubic.gemma.persistence.service.association
ubic.gemma.persistence.service.expression.designElement
ubic.gemma.persistence.util

Classes in ubic.gemma.model.association used by ubic.gemma.core.goldenpath

Class	Description
BioSequence2GeneProduct	An association between a BioSequence and a Gene Product.

Classes in ubic.gemma.model.association used by ubic.gemma.core.loader.association

Class	Description
Gene2GOAssociation

Classes in ubic.gemma.model.association used by ubic.gemma.model.association

Class	Description
BioSequence2GeneProduct	An association between a BioSequence and a Gene Product.
Gene2GOAssociation
GOEvidenceCode	This enumeration was originally based on GO, but is used for all entities that have evidenciary aspects; Thus it has been expanded to include: Terms from RGD (rat genome database) IED = Inferred from experimental data IAGP = Inferred from association of genotype and phenotype IPM = Inferred from phenotype manipulation QTM = Quantitative Trait Measurement And our own custom code IIA which means Inferred from Imported Annotation to distinguish IEAs that we ourselves have computed See https://geneontology.org/docs/guide-go-evidence-codes/ for documentation of GO evidence codes.
ReferenceAssociation	An association between a BioSequence and a GeneProduct based on external database identifiers.

Classes in ubic.gemma.model.association used by ubic.gemma.model.association.coexpression

Class	Description
Gene2GeneIdAssociation	Entity representing a relationship between two genes identified by ID, rather than by the Gene entity (for efficiency reasons).

Classes in ubic.gemma.model.association used by ubic.gemma.model.common.description

Class

Description

GOEvidenceCode

This enumeration was originally based on GO, but is used for all entities that have evidenciary aspects; Thus it has been expanded to include: Terms from RGD (rat genome database) IED = Inferred from experimental data IAGP = Inferred from association of genotype and phenotype IPM = Inferred from phenotype manipulation QTM = Quantitative Trait Measurement And our own custom code IIA which means Inferred from Imported Annotation to distinguish IEAs that we ourselves have computed See https://geneontology.org/docs/guide-go-evidence-codes/ for documentation of GO evidence codes.

Classes in ubic.gemma.model.association used by ubic.gemma.model.genome.biosequence

Class	Description
BioSequence2GeneProduct	An association between a BioSequence and a Gene Product.

Classes in ubic.gemma.model.association used by ubic.gemma.model.genome.sequenceAnalysis

Class	Description
BioSequence2GeneProduct	An association between a BioSequence and a Gene Product.

Classes in ubic.gemma.model.association used by ubic.gemma.persistence.service.association

Class	Description
Gene2GOAssociation

Classes in ubic.gemma.model.association used by ubic.gemma.persistence.service.expression.designElement

Class	Description
BioSequence2GeneProduct	An association between a BioSequence and a Gene Product.

Classes in ubic.gemma.model.association used by ubic.gemma.persistence.util

Class	Description
Gene2GOAssociation