Uses of Package
ubic.gemma.model.association
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Classes in ubic.gemma.model.association used by ubic.gemma.core.goldenpath Class Description BioSequence2GeneProduct An association between a BioSequence and a Gene Product. -
Classes in ubic.gemma.model.association used by ubic.gemma.core.loader.association Class Description Gene2GOAssociation -
Classes in ubic.gemma.model.association used by ubic.gemma.model.association Class Description BioSequence2GeneProduct An association between a BioSequence and a Gene Product.Gene2GOAssociation GOEvidenceCode This enumeration was originally based on GO, but is used for all entities that have evidenciary aspects; Thus it has been expanded to include: Terms from RGD (rat genome database) IED = Inferred from experimental data IAGP = Inferred from association of genotype and phenotype IPM = Inferred from phenotype manipulation QTM = Quantitative Trait Measurement And our own custom code IIA which means Inferred from Imported Annotation to distinguish IEAs that we ourselves have computed See https://geneontology.org/docs/guide-go-evidence-codes/ for documentation of GO evidence codes.ReferenceAssociation An association between a BioSequence and a GeneProduct based on external database identifiers. -
Classes in ubic.gemma.model.association used by ubic.gemma.model.association.coexpression Class Description Gene2GeneIdAssociation Entity representing a relationship between two genes identified by ID, rather than by the Gene entity (for efficiency reasons). -
Classes in ubic.gemma.model.association used by ubic.gemma.model.common.description Class Description GOEvidenceCode This enumeration was originally based on GO, but is used for all entities that have evidenciary aspects; Thus it has been expanded to include: Terms from RGD (rat genome database) IED = Inferred from experimental data IAGP = Inferred from association of genotype and phenotype IPM = Inferred from phenotype manipulation QTM = Quantitative Trait Measurement And our own custom code IIA which means Inferred from Imported Annotation to distinguish IEAs that we ourselves have computed See https://geneontology.org/docs/guide-go-evidence-codes/ for documentation of GO evidence codes. -
Classes in ubic.gemma.model.association used by ubic.gemma.model.genome.biosequence Class Description BioSequence2GeneProduct An association between a BioSequence and a Gene Product. -
Classes in ubic.gemma.model.association used by ubic.gemma.model.genome.sequenceAnalysis Class Description BioSequence2GeneProduct An association between a BioSequence and a Gene Product. -
Classes in ubic.gemma.model.association used by ubic.gemma.persistence.service.association Class Description Gene2GOAssociation -
Classes in ubic.gemma.model.association used by ubic.gemma.persistence.service.expression.designElement Class Description BioSequence2GeneProduct An association between a BioSequence and a Gene Product. -
Classes in ubic.gemma.model.association used by ubic.gemma.persistence.util Class Description Gene2GOAssociation