Uses of Enum Class
ubic.gemma.model.association.GOEvidenceCode

Packages that use GOEvidenceCode

Package	Description
ubic.gemma.model.association
ubic.gemma.model.common.description
ubic.gemma.persistence.service.common.description

Uses of GOEvidenceCode in ubic.gemma.model.association

Subclasses with type arguments of type GOEvidenceCode in ubic.gemma.model.association

Modifier and Type	Class	Description
enum	GOEvidenceCode	This enumeration was originally based on GO, but is used for all entities that have evidenciary aspects; Thus it has been expanded to include: Terms from RGD (rat genome database) IED = Inferred from experimental data IAGP = Inferred from association of genotype and phenotype IPM = Inferred from phenotype manipulation QTM = Quantitative Trait Measurement And our own custom code IIA which means Inferred from Imported Annotation to distinguish IEAs that we ourselves have computed See https://geneontology.org/docs/guide-go-evidence-codes/ for documentation of GO evidence codes.

Methods in ubic.gemma.model.association that return GOEvidenceCode

Modifier and Type	Method	Description
GOEvidenceCode	Gene2GOAssociation.getEvidenceCode()
static GOEvidenceCode	GOEvidenceCode.valueOf(String name)	Returns the enum constant of this class with the specified name.
static GOEvidenceCode[]	GOEvidenceCode.values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods in ubic.gemma.model.association with parameters of type GOEvidenceCode

Modifier and Type	Method	Description
static Gene2GOAssociation	Gene2GOAssociation.Factory.newInstance(Gene gene, Characteristic ontologyEntry, GOEvidenceCode evidenceCode)
void	Gene2GOAssociation.setEvidenceCode(GOEvidenceCode evidenceCode)

Uses of GOEvidenceCode in ubic.gemma.model.common.description

Methods in ubic.gemma.model.common.description that return GOEvidenceCode

Modifier and Type	Method	Description
GOEvidenceCode	AnnotationRelation.getEvidenceCode()
GOEvidenceCode	Characteristic.getEvidenceCode()
GOEvidenceCode	PublicationAssociation.getEvidenceCode()

Methods in ubic.gemma.model.common.description with parameters of type GOEvidenceCode

Modifier and Type	Method	Description
static Characteristic	Characteristic.Factory.newInstance(String name, String description, String value, String valueUri, String category, String categoryUri, GOEvidenceCode evidenceCode)
void	AnnotationRelation.setEvidenceCode(GOEvidenceCode evidenceCode)
void	Characteristic.setEvidenceCode(GOEvidenceCode evidenceCode)
void	PublicationAssociation.setEvidenceCode(GOEvidenceCode evidenceCode)

Uses of GOEvidenceCode in ubic.gemma.persistence.service.common.description

Methods in ubic.gemma.persistence.service.common.description that return GOEvidenceCode

Modifier and Type	Method	Description
GOEvidenceCode	PublicationAssertion.getEvidenceCode()

Constructors in ubic.gemma.persistence.service.common.description with parameters of type GOEvidenceCode

Modifier	Constructor	Description
	PublicationAssertion(BibliographicReference publication, PublicationAssociationSource source, String evidence, String supportingEvidence, GOEvidenceCode evidenceCode, Double confidence, String assertedBy)