Package ubic.gemma.model.common.description
package ubic.gemma.model.common.description
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ClassDescriptionOne term stands in some relation to another term:
subject — predicate → object, plus where that came from.How anAnnotationRelationcame to be known, ranked best first.Whether a source is stating that a relation holds, or stating that it does not.Hibernate Search 7 indexed root.represents a BibliographicReferenceValueObject when this value object is needed in core, the same value object exists in webBase class forKeywordandMedicalSubjectHeading; the@Indexedannotation lives on the concrete subclasses.Enumeration of commonly used categories for referring to in the code.Represents a category.Instances of this are used to describe other entities.Value object representation of aCharacteristic.Represents a BibliographicReference as a citation string (which is really super light value object).A reference to a record in a database.ValueObject for database entryA publication as it appears in the context of one dataset: the reference, plus the evidenced claim that ties it to (or rules it out for) that dataset.Enumerates various globally availableExternalDatabaseby name.Hibernate Search 7 mapping: indexed root for keyword phrases attached to aBibliographicReference.Hibernate Search 7 mapping: indexed root for MeSH terms attached to aBibliographicReference.An evidenced claim about whether aBibliographicReferencebelongs to anInvestigation— who says so, on what basis, and whether they are affirming or denying it.Who asserted aPublicationAssociation— the authority behind the claim, as distinct from theevidencethey gave for it.Whether aPublicationAssociationaffirms or denies the link between an experiment and a publication.Wire form of aPublicationAssociation: why a publication is (or is not) attached to a dataset, and on whose authority.Which end of a relation implies the other.Whether a relation says something about the TERM, or records a parameter of an EXPERIMENT.Represents a value.Commonly used values across Gemma.Interface implemented by entities that are externally versioned.