Class BibliographicReferenceValueObject

java.lang.Object

ubic.gemma.model.common.IdentifiableValueObject<BibliographicReference>

ubic.gemma.model.common.description.BibliographicReferenceValueObject

All Implemented Interfaces:

Serializable, Identifiable

Direct Known Subclasses:

DatasetPublicationValueObject

public class BibliographicReferenceValueObject
extends IdentifiableValueObject<BibliographicReference>

represents a BibliographicReferenceValueObject when this value object is needed in core, the same value object exists in web

Author:

pavlidis

See Also:

• Serialized Form

Field Summary

Fields inherited from class IdentifiableValueObject

id

Constructor Summary

Constructors

Constructor	Description
BibliographicReferenceValueObject()	Required when using the class as a spring bean.
BibliographicReferenceValueObject(Long id)
BibliographicReferenceValueObject(Long id, String abstractText, String authorList, String issue, String pages, String pubAccession, String publication, Date publicationDate, String publisher, String title, String volume, Collection<ExpressionExperimentValueObject> experiments)
BibliographicReferenceValueObject(BibliographicReference ref)	does not set related experiments field

Method Summary

Modifier and Type	Method	Description
static CitationValueObject	constructCitation(BibliographicReference bib)
static Collection<CitationValueObject>	constructCitations(Collection<BibliographicReference> bibs)
static List<BibliographicReferenceValueObject>	convert2ValueObjects(Collection<BibliographicReference> refs)	does not set related experiments field
String	getAbstractText()
String	getAuthorList()
Collection<String>	getChemicalsTerms()
CitationValueObject	getCitation()
Collection<ExpressionExperimentValueObject>	getExperiments()
String	getIssue()
Collection<String>	getMeshTerms()
String	getPages()
String	getPubAccession()
String	getPublication()
Date	getPublicationDate()
String	getPublisher()
String	getTitle()
String	getVolume()
boolean	isRetracted()
void	setAbstractText(String abstractText)
void	setAuthorList(String authorList)
void	setCitation(CitationValueObject citation)
void	setExperiments(Collection<ExpressionExperimentValueObject> experiments)
void	setIssue(String issue)
void	setPages(String pages)
void	setPubAccession(String pubAccession)
void	setPublication(String publication)
void	setPublicationDate(Date publicationDate)
void	setPublisher(String publisher)
void	setRetracted(boolean retracted)
void	setTitle(String title)
void	setVolume(String volume)

Methods inherited from class IdentifiableValueObject

canEqual, equals, getId, hashCode, setId, toString

Methods inherited from class Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

BibliographicReferenceValueObject

public BibliographicReferenceValueObject()

Required when using the class as a spring bean.

BibliographicReferenceValueObject

public BibliographicReferenceValueObject(Long id)

BibliographicReferenceValueObject

public BibliographicReferenceValueObject(BibliographicReference ref)

does not set related experiments field

Parameters:

ref - bib ref

BibliographicReferenceValueObject

public BibliographicReferenceValueObject(Long id,
 String abstractText,
 String authorList,
 String issue,
 String pages,
 String pubAccession,
 String publication,
 Date publicationDate,
 String publisher,
 String title,
 String volume,
 Collection<ExpressionExperimentValueObject> experiments)

Method Details

constructCitation

public static CitationValueObject constructCitation(BibliographicReference bib)

constructCitations

public static Collection<CitationValueObject> constructCitations(Collection<BibliographicReference> bibs)

convert2ValueObjects

public static List<BibliographicReferenceValueObject> convert2ValueObjects(Collection<BibliographicReference> refs)

does not set related experiments field

Parameters:

refs - bib refs

Returns:

bib ref VOs

getAbstractText

public String getAbstractText()

getAuthorList

public String getAuthorList()

getCitation

public CitationValueObject getCitation()

getExperiments

public Collection<ExpressionExperimentValueObject> getExperiments()

getIssue

public String getIssue()

getPages

public String getPages()

getPubAccession

public String getPubAccession()

getPublication

public String getPublication()

getPublicationDate

public Date getPublicationDate()

getPublisher

public String getPublisher()

getTitle

public String getTitle()

getVolume

public String getVolume()

getMeshTerms

public Collection<String> getMeshTerms()

getChemicalsTerms

public Collection<String> getChemicalsTerms()

isRetracted

public boolean isRetracted()

setAbstractText

public void setAbstractText(String abstractText)

setAuthorList

public void setAuthorList(String authorList)

setCitation

public void setCitation(CitationValueObject citation)

setExperiments

public void setExperiments(Collection<ExpressionExperimentValueObject> experiments)

setIssue

public void setIssue(String issue)

setPages

public void setPages(String pages)

setPubAccession

public void setPubAccession(String pubAccession)

setPublication

public void setPublication(String publication)

setPublicationDate

public void setPublicationDate(Date publicationDate)

setPublisher

public void setPublisher(String publisher)

setTitle

public void setTitle(String title)

setVolume

public void setVolume(String volume)

setRetracted

public void setRetracted(boolean retracted)