Package ubic.gemma.model.common.description

Class BibliographicReferenceValueObject

java.lang.Object
ubic.gemma.model.common.IdentifiableValueObject<BibliographicReference>
ubic.gemma.model.common.description.BibliographicReferenceValueObject
All Implemented Interfaces:
Serializable, Identifiable
public class BibliographicReferenceValueObject extends IdentifiableValueObject<BibliographicReference>
represents a BibliographicReferenceValueObject when this value object is needed in core, the same value object exists in web
Author:
pavlidis
See Also:

  • Constructor Details

    • BibliographicReferenceValueObject

      public BibliographicReferenceValueObject()
      Required when using the class as a spring bean.

    • BibliographicReferenceValueObject

      public BibliographicReferenceValueObject(Long id)

    • BibliographicReferenceValueObject

      public BibliographicReferenceValueObject(BibliographicReference ref)
      does not set related experiments field
      Parameters:
      ref - bib ref

    • BibliographicReferenceValueObject

      public BibliographicReferenceValueObject(Long id, String abstractText, String authorList, String issue, String pages, String pubAccession, String publication, Date publicationDate, String publisher, String title, String volume, Collection<ExpressionExperimentValueObject> experiments)

  • Method Details

    • constructCitation

      public static CitationValueObject constructCitation(BibliographicReference bib)

    • constructCitations

      public static Collection<CitationValueObject> constructCitations(Collection<BibliographicReference> bibs)

    • convert2ValueObjects

      public static List<BibliographicReferenceValueObject> convert2ValueObjects(Collection<BibliographicReference> refs)
      does not set related experiments field
      Parameters:
      refs - bib refs
      Returns:
      bib ref VOs

    • getAbstractText

      public String getAbstractText()
      Returns:
      the abstractText

    • setAbstractText

      public void setAbstractText(String abstractText)
      Parameters:
      abstractText - the abstractText to set

    • getAuthorList

      public String getAuthorList()
      Returns:
      the authorList

    • setAuthorList

      public void setAuthorList(String authorList)
      Parameters:
      authorList - the authorList to set

    • getChemicalsTerms

      public Collection<String> getChemicalsTerms()
      Returns:
      the chemicalsTerms

    • getCitation

      public CitationValueObject getCitation()
      Returns:
      the citation

    • setCitation

      public void setCitation(CitationValueObject citation)
      Parameters:
      citation - the citation to set

    • getExperiments

      public Collection<ExpressionExperimentValueObject> getExperiments()
      Returns:
      the experiments

    • setExperiments

      public void setExperiments(Collection<ExpressionExperimentValueObject> experiments)
      Parameters:
      experiments - the experiments to set

    • getIssue

      public String getIssue()
      Returns:
      the issue

    • setIssue

      public void setIssue(String issue)
      Parameters:
      issue - the issue to set

    • getMeshTerms

      public Collection<String> getMeshTerms()
      Returns:
      the meshTerms

    • getPages

      public String getPages()
      Returns:
      the pages

    • setPages

      public void setPages(String pages)
      Parameters:
      pages - the pages to set

    • getPubAccession

      public String getPubAccession()
      Returns:
      the pubAccession

    • setPubAccession

      public void setPubAccession(String pubAccession)
      Parameters:
      pubAccession - the pubAccession to set

    • getPublication

      public String getPublication()
      Returns:
      the publication

    • setPublication

      public void setPublication(String publication)
      Parameters:
      publication - the publication to set

    • getPublicationDate

      public Date getPublicationDate()
      Returns:
      the publicationDate

    • setPublicationDate

      public void setPublicationDate(Date publicationDate)
      Parameters:
      publicationDate - the publicationDate to set

    • getPublisher

      public String getPublisher()
      Returns:
      the publisher

    • setPublisher

      public void setPublisher(String publisher)
      Parameters:
      publisher - the publisher to set

    • getTitle

      public String getTitle()
      Returns:
      the title

    • setTitle

      public void setTitle(String title)
      Parameters:
      title - the title to set

    • getVolume

      public String getVolume()
      Returns:
      the volume

    • setVolume

      public void setVolume(String volume)
      Parameters:
      volume - the volume to set

    • isRetracted

      public boolean isRetracted()

    • setRetracted

      public void setRetracted(boolean retracted)