Uses of Class
ubic.gemma.model.common.description.BibliographicReferenceValueObject

Packages that use BibliographicReferenceValueObject

Package	Description
ubic.gemma.core.association.phenotype
ubic.gemma.model.common.description
ubic.gemma.persistence.service.common.description
ubic.gemma.web.controller
ubic.gemma.web.controller.common.description.bibref

Uses of BibliographicReferenceValueObject in ubic.gemma.core.association.phenotype

Methods in ubic.gemma.core.association.phenotype that return BibliographicReferenceValueObject

Modifier and Type	Method	Description
BibliographicReferenceValueObject	PhenotypeAssociationManagerService.findBibliographicReference(String pubMedId)	Deprecated. Find all phenotypes associated to a pubmedID
BibliographicReferenceValueObject	PhenotypeAssociationManagerServiceImpl.findBibliographicReference(String pubMedId)	Deprecated.

Uses of BibliographicReferenceValueObject in ubic.gemma.model.common.description

Methods in ubic.gemma.model.common.description that return types with arguments of type BibliographicReferenceValueObject

Modifier and Type	Method	Description
static List<BibliographicReferenceValueObject>	BibliographicReferenceValueObject.convert2ValueObjects(Collection<BibliographicReference> refs)	does not set related experiments field

Uses of BibliographicReferenceValueObject in ubic.gemma.persistence.service.common.description

Methods in ubic.gemma.persistence.service.common.description that return BibliographicReferenceValueObject

Modifier and Type	Method	Description
protected BibliographicReferenceValueObject	BibliographicReferenceDaoImpl.doLoadValueObject(BibliographicReference entity)
BibliographicReferenceValueObject	BibliographicReferenceService.findVOByExternalId(String id)	Get a reference by the unqualified external id.
BibliographicReferenceValueObject	BibliographicReferenceServiceImpl.findVOByExternalId(String id)
BibliographicReferenceValueObject	BibliographicReferenceServiceImpl.loadValueObject(BibliographicReference entity)

Methods in ubic.gemma.persistence.service.common.description that return types with arguments of type BibliographicReferenceValueObject

Modifier and Type	Method	Description
List<BibliographicReferenceValueObject>	BibliographicReferenceServiceImpl.loadAllValueObjects()
List<BibliographicReferenceValueObject>	BibliographicReferenceService.search(String query)
List<BibliographicReferenceValueObject>	BibliographicReferenceService.search(SearchSettingsValueObject settings)
List<BibliographicReferenceValueObject>	BibliographicReferenceServiceImpl.search(String query)
List<BibliographicReferenceValueObject>	BibliographicReferenceServiceImpl.search(SearchSettingsValueObject settings)

Uses of BibliographicReferenceValueObject in ubic.gemma.web.controller

Methods in ubic.gemma.web.controller that return types with arguments of type BibliographicReferenceValueObject

Modifier and Type	Method	Description
Collection<BibliographicReferenceValueObject>	PhenotypeController.findBibliographicReference(String pubMedId, Long evidenceId)	Finds bibliographic reference with the given pubmed id.

Uses of BibliographicReferenceValueObject in ubic.gemma.web.controller.common.description.bibref

Methods in ubic.gemma.web.controller.common.description.bibref that return BibliographicReferenceValueObject

Modifier and Type	Method	Description
BibliographicReferenceValueObject	BibliographicReferenceController.load(Long id)
BibliographicReferenceValueObject	BibliographicReferenceController.loadFromPubmedID(String pubMedID)
BibliographicReferenceValueObject	BibliographicReferenceController.update(String pubMedId)

Methods in ubic.gemma.web.controller.common.description.bibref that return types with arguments of type BibliographicReferenceValueObject

Modifier and Type	Method	Description
JsonReaderResponse<BibliographicReferenceValueObject>	BibliographicReferenceController.browse(ListBatchCommand batch)
Collection<BibliographicReferenceValueObject>	BibliographicReferenceController.loadAllForExperiments()
JsonReaderResponse<BibliographicReferenceValueObject>	BibliographicReferenceController.loadMultiple(Collection<Long> ids)
JsonReaderResponse<BibliographicReferenceValueObject>	BibliographicReferenceController.search(SearchSettingsValueObject settings)