Package ubic.gemma.model.common.description

Class BibliographicReference

java.lang.Object

ubic.gemma.model.common.AbstractDescribable

ubic.gemma.model.common.description.BibliographicReference

All Implemented Interfaces:

Serializable, Describable, Identifiable

@Indexed
public class BibliographicReference
extends AbstractDescribable
implements Serializable

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	BibliographicReference.Factory

Constructor Summary

Constructors

Constructor	Description
BibliographicReference()

Method Summary

Modifier and Type	Method	Description
String	getAbstractText()
String	getAnnotatedAbstract()	Deprecated.
Set<Characteristic>	getAnnotations()	Deprecated.
String	getAuthorList()
Set<Compound>	getChemicals()
String	getCitation()
String	getEditor()
String	getFullTextUri()
Long	getId()
String	getIssue()
Set<Keyword>	getKeywords()
Set<MedicalSubjectHeading>	getMeshTerms()
String	getName()	Obtain the name of an object is a possibly ambiguous human-readable identifier that need not be an external database reference.
String	getPages()
DatabaseEntry	getPubAccession()
String	getPublication()
Date	getPublicationDate()
String	getPublisher()
Boolean	getRetracted()
String	getTitle()
String	getVolume()
void	setAbstractText(String abstractText)
void	setAnnotatedAbstract(String annotatedAbstract)	Deprecated.
void	setAnnotations(Set<Characteristic> annotations)	Deprecated.
void	setAuthorList(String authorList)
void	setChemicals(Set<Compound> chemicals)
void	setCitation(String citation)
void	setEditor(String editor)
void	setFullTextUri(String fullTextUri)
void	setIssue(String issue)
void	setKeywords(Set<Keyword> keywords)
void	setMeshTerms(Set<MedicalSubjectHeading> meshTerms)
void	setPages(String pages)
void	setPubAccession(DatabaseEntry pubAccession)
void	setPublication(String publication)
void	setPublicationDate(Date publicationDate)
void	setPublisher(String publisher)
void	setRetracted(Boolean retracted)
void	setTitle(String title)
void	setVolume(String volume)

Methods inherited from class ubic.gemma.model.common.AbstractDescribable

equals, getDescription, hashCode, setDescription, setId, setName, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

BibliographicReference

public BibliographicReference()

Method Detail

getId

@DocumentId
public Long getId()

Specified by:

getId in interface Identifiable

Overrides:

getId in class AbstractDescribable

getName

@Field
public String getName()

Description copied from interface: Describable

Obtain the name of an object is a possibly ambiguous human-readable identifier that need not be an external database reference.

Specified by:

getName in interface Describable

Overrides:

getName in class AbstractDescribable

getAbstractText

@Field(store=YES)
public String getAbstractText()

setAbstractText

public void setAbstractText(String abstractText)

getAnnotatedAbstract

@Deprecated
public String getAnnotatedAbstract()

Deprecated.

Returns:

A version of the abstract with inserted markup (e.g., abbreviation expansions, part-of-speech)

setAnnotatedAbstract

@Deprecated
public void setAnnotatedAbstract(String annotatedAbstract)

Deprecated.

getAnnotations

@Deprecated
public Set<Characteristic> getAnnotations()

Deprecated.

setAnnotations

@Deprecated
public void setAnnotations(Set<Characteristic> annotations)

Deprecated.

getAuthorList

@Field(store=YES)
public String getAuthorList()

setAuthorList

public void setAuthorList(String authorList)

getChemicals

@IndexedEmbedded
public Set<Compound> getChemicals()

setChemicals

public void setChemicals(Set<Compound> chemicals)

getCitation

public String getCitation()

Returns:

The citation as a pre-composed string

setCitation

public void setCitation(String citation)

getEditor

public String getEditor()

setEditor

public void setEditor(String editor)

getFullTextUri

@Field(analyze=NO)
public String getFullTextUri()

Returns:

URI of the full text on the publisher's web site.

setFullTextUri

public void setFullTextUri(String fullTextUri)

getIssue

public String getIssue()

setIssue

public void setIssue(String issue)

getKeywords

@IndexedEmbedded
public Set<Keyword> getKeywords()

setKeywords

public void setKeywords(Set<Keyword> keywords)

getMeshTerms

@IndexedEmbedded
public Set<MedicalSubjectHeading> getMeshTerms()

setMeshTerms

public void setMeshTerms(Set<MedicalSubjectHeading> meshTerms)

getPages

public String getPages()

setPages

public void setPages(String pages)

getPubAccession

@IndexedEmbedded
public DatabaseEntry getPubAccession()

setPubAccession

public void setPubAccession(DatabaseEntry pubAccession)

getPublication

public String getPublication()

setPublication

public void setPublication(String publication)

getPublicationDate

public Date getPublicationDate()

setPublicationDate

public void setPublicationDate(Date publicationDate)

getPublisher

public String getPublisher()

setPublisher

public void setPublisher(String publisher)

getTitle

@Field(store=YES)
public String getTitle()

setTitle

public void setTitle(String title)

getVolume

public String getVolume()

setVolume

public void setVolume(String volume)

getRetracted

public Boolean getRetracted()

Returns:

true if article is recorded as retracted

setRetracted

public void setRetracted(Boolean retracted)

Parameters:

retracted - the retracted to set