Uses of Package
ubic.gemma.model.common.description
-
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.analysis.expression.diff Class Description Characteristic Instances of this are used to describe other entities. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.analysis.preprocess.batcheffects Class Description LocalFile Not a persistent entity -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.analysis.sequence Class Description ExternalDatabase -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.association.phenotype Class Description BibliographicReferenceValueObject represents a BibliographicReferenceValueObject when this value object is needed in core, the same value object exists in webCharacteristic Instances of this are used to describe other entities.CharacteristicValueObject Value object representation of aCharacteristic.ExternalDatabaseValueObject -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.goldenpath Class Description ExternalDatabase -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.association Class Description LocalFile Not a persistent entity -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.entrez.pubmed Class Description BibliographicReference -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.expression.arrayDesign Class Description ExternalDatabase LocalFile Not a persistent entity -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.expression.arrayExpress Class Description LocalFile Not a persistent entity -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.expression.geo Class Description DatabaseEntry A reference to a record in a database. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.expression.geo.fetcher Class Description LocalFile Not a persistent entity -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.expression.geo.model Class Description Characteristic Instances of this are used to describe other entities. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.expression.simple.model Class Description DatabaseEntry A reference to a record in a database. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.genome Class Description ExternalDatabase -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.genome.gene.ncbi Class Description ExternalDatabase -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.genome.taxon Class Description LocalFile Not a persistent entity -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.util.fetcher Class Description LocalFile Not a persistent entity -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.util.parser Class Description DatabaseEntry A reference to a record in a database. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.ontology Class Description CharacteristicValueObject Value object representation of aCharacteristic. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.ontology.providers Class Description Characteristic Instances of this are used to describe other entities. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.search Class Description BibliographicReference -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.search.source Class Description BibliographicReference -
Classes in ubic.gemma.model.common.description used by ubic.gemma.core.tasks.maintenance Class Description AnnotationValueObject -
Classes in ubic.gemma.model.common.description used by ubic.gemma.model.analysis Class Description BibliographicReference Characteristic Instances of this are used to describe other entities. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.model.association Class Description Characteristic Instances of this are used to describe other entities.DatabaseEntry A reference to a record in a database. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.model.association.phenotype Class Description BibliographicReference Characteristic Instances of this are used to describe other entities.DatabaseEntry A reference to a record in a database. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.model.blacklist Class Description DatabaseEntry A reference to a record in a database.ExternalDatabaseValueObject -
Classes in ubic.gemma.model.common.description used by ubic.gemma.model.common.description Class Description BibliographicReference BibliographicReferenceValueObject represents a BibliographicReferenceValueObject when this value object is needed in core, the same value object exists in webBibRefAnnotation Characteristic Instances of this are used to describe other entities.CharacteristicValueObject Value object representation of aCharacteristic.CitationValueObject Represents a BibliographicReference as a citation string (which is really super light value object).DatabaseEntry A reference to a record in a database.DatabaseType ExternalDatabase ExternalDatabaseValueObject Keyword LocalFile Not a persistent entityMedicalSubjectHeading Versioned Interface implemented by entities that are externally versioned. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.model.expression.arrayDesign Class Description DatabaseEntry A reference to a record in a database.Versioned Interface implemented by entities that are externally versioned. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.model.expression.bioAssay Class Description DatabaseEntry A reference to a record in a database.DatabaseEntryValueObject ValueObject for database entry -
Classes in ubic.gemma.model.common.description used by ubic.gemma.model.expression.biomaterial Class Description Characteristic Instances of this are used to describe other entities.DatabaseEntry A reference to a record in a database. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.model.expression.experiment Class Description BibliographicReference Characteristic Instances of this are used to describe other entities.CitationValueObject Represents a BibliographicReference as a citation string (which is really super light value object).DatabaseEntry A reference to a record in a database. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.model.genome Class Description DatabaseEntry A reference to a record in a database.ExternalDatabase ExternalDatabaseValueObject -
Classes in ubic.gemma.model.common.description used by ubic.gemma.model.genome.biosequence Class Description DatabaseEntry A reference to a record in a database. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.model.genome.gene Class Description BibliographicReference Characteristic Instances of this are used to describe other entities.DatabaseEntry A reference to a record in a database. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.model.genome.gene.phenotype.valueObject Class Description CharacteristicValueObject Value object representation of aCharacteristic.CitationValueObject Represents a BibliographicReference as a citation string (which is really super light value object).DatabaseEntry A reference to a record in a database.DatabaseEntryValueObject ValueObject for database entryExternalDatabaseValueObject -
Classes in ubic.gemma.model.common.description used by ubic.gemma.model.genome.sequenceAnalysis Class Description DatabaseEntryValueObject ValueObject for database entryExternalDatabase -
Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.persister Class Description DatabaseEntry A reference to a record in a database.ExternalDatabase -
Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.service.association Class Description Characteristic Instances of this are used to describe other entities. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.service.association.phenotype Class Description CharacteristicValueObject Value object representation of aCharacteristic.ExternalDatabase -
Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.service.association.phenotype.service Class Description CharacteristicValueObject Value object representation of aCharacteristic.ExternalDatabase -
Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.service.common.description Class Description BibliographicReference BibliographicReferenceValueObject represents a BibliographicReferenceValueObject when this value object is needed in core, the same value object exists in webCharacteristic Instances of this are used to describe other entities.CharacteristicValueObject Value object representation of aCharacteristic.DatabaseEntry A reference to a record in a database.DatabaseEntryValueObject ValueObject for database entryExternalDatabase -
Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.service.expression.biomaterial Class Description Characteristic Instances of this are used to describe other entities. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.service.expression.experiment Class Description AnnotationValueObject BibliographicReference Characteristic Instances of this are used to describe other entities.DatabaseEntry A reference to a record in a database. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.service.genome Class Description ExternalDatabase -
Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.service.genome.biosequence Class Description DatabaseEntry A reference to a record in a database. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.service.genome.gene Class Description AnnotationValueObject ExternalDatabase -
Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.service.genome.sequenceAnalysis Class Description AnnotationValueObject -
Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.util Class Description BibliographicReference Characteristic Instances of this are used to describe other entities.DatabaseEntry A reference to a record in a database.ExternalDatabase LocalFile Not a persistent entity -
Classes in ubic.gemma.model.common.description used by ubic.gemma.rest Class Description AnnotationValueObject Characteristic Instances of this are used to describe other entities.ExternalDatabaseValueObject Versioned Interface implemented by entities that are externally versioned. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.rest.util.args Class Description AnnotationValueObject -
Classes in ubic.gemma.model.common.description used by ubic.gemma.web.controller Class Description BibliographicReferenceValueObject represents a BibliographicReferenceValueObject when this value object is needed in core, the same value object exists in webCharacteristicValueObject Value object representation of aCharacteristic.ExternalDatabaseValueObject -
Classes in ubic.gemma.model.common.description used by ubic.gemma.web.controller.common Class Description AnnotationValueObject -
Classes in ubic.gemma.model.common.description used by ubic.gemma.web.controller.common.description.bibref Class Description BibliographicReferenceValueObject represents a BibliographicReferenceValueObject when this value object is needed in core, the same value object exists in web -
Classes in ubic.gemma.model.common.description used by ubic.gemma.web.controller.expression.arrayDesign Class Description Versioned Interface implemented by entities that are externally versioned. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.web.controller.expression.biomaterial Class Description AnnotationValueObject -
Classes in ubic.gemma.model.common.description used by ubic.gemma.web.controller.expression.experiment Class Description AnnotationValueObject Characteristic Instances of this are used to describe other entities.CharacteristicValueObject Value object representation of aCharacteristic. -
Classes in ubic.gemma.model.common.description used by ubic.gemma.web.controller.genome.gene Class Description AnnotationValueObject -
Classes in ubic.gemma.model.common.description used by ubic.gemma.web.taglib Class Description BibliographicReference DatabaseEntry A reference to a record in a database.DatabaseEntryValueObject ValueObject for database entry