Uses of Package
ubic.gemma.model.common.description

Packages that use ubic.gemma.model.common.description

Package	Description
ubic.gemma.core.analysis.expression.diff
ubic.gemma.core.analysis.sequence
ubic.gemma.core.analysis.singleCell	This package contains classes for analysing single-cell expression data.
ubic.gemma.core.analysis.singleCell.aggregate	This package contains classes for subsetting and aggregating single-cell data.
ubic.gemma.core.goldenpath
ubic.gemma.core.loader.entrez.pubmed
ubic.gemma.core.loader.expression	This package contains interfaces and classes for loading expression data.
ubic.gemma.core.loader.expression.arrayDesign
ubic.gemma.core.loader.expression.cellxgene	This package contains classes for loading expression data from CELLxGENE.
ubic.gemma.core.loader.expression.geo
ubic.gemma.core.loader.expression.geo.model
ubic.gemma.core.loader.expression.singleCell	This package contains classes for loading single-cell expression data.
ubic.gemma.core.loader.genome
ubic.gemma.core.loader.genome.gene.ncbi
ubic.gemma.core.loader.util
ubic.gemma.core.ontology
ubic.gemma.core.ontology.providers
ubic.gemma.core.search
ubic.gemma.core.search.source
ubic.gemma.core.tasks.maintenance
ubic.gemma.core.visualization
ubic.gemma.core.visualization.cellbrowser	This package contains classes related to the Cell Browser visualization tool.
ubic.gemma.model.analysis
ubic.gemma.model.analysis.expression
ubic.gemma.model.association
ubic.gemma.model.blacklist
ubic.gemma.model.common.description
ubic.gemma.model.expression.arrayDesign
ubic.gemma.model.expression.bioAssay
ubic.gemma.model.expression.bioAssayData
ubic.gemma.model.expression.biomaterial
ubic.gemma.model.expression.experiment
ubic.gemma.model.genome
ubic.gemma.model.genome.biosequence
ubic.gemma.model.genome.gene
ubic.gemma.model.genome.sequenceAnalysis
ubic.gemma.persistence.persister
ubic.gemma.persistence.service.analysis.expression
ubic.gemma.persistence.service.association
ubic.gemma.persistence.service.common.description
ubic.gemma.persistence.service.expression.biomaterial
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.persistence.service.genome
ubic.gemma.persistence.service.genome.biosequence
ubic.gemma.persistence.service.genome.gene
ubic.gemma.persistence.service.genome.sequenceAnalysis
ubic.gemma.persistence.util
ubic.gemma.rest
ubic.gemma.rest.util.args
ubic.gemma.web.controller.common.description
ubic.gemma.web.controller.common.description.bibref
ubic.gemma.web.controller.expression.arrayDesign
ubic.gemma.web.controller.expression.biomaterial
ubic.gemma.web.controller.expression.experiment
ubic.gemma.web.controller.genome.gene
ubic.gemma.web.taglib	This package contains custom JSP tag libraries used in the Gemma Web application.
ubic.gemma.web.util

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.analysis.expression.diff

Class	Description
Characteristic	Instances of this are used to describe other entities.

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.analysis.sequence

Class	Description
ExternalDatabase

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.analysis.singleCell

Class	Description
Characteristic	Instances of this are used to describe other entities.

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.analysis.singleCell.aggregate

Class	Description
Characteristic	Instances of this are used to describe other entities.

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.goldenpath

Class	Description
ExternalDatabase

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.entrez.pubmed

Class	Description
BibliographicReference

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.expression

Class	Description
Characteristic	Instances of this are used to describe other entities.

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.expression.arrayDesign

Class	Description
ExternalDatabase

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.expression.cellxgene

Class	Description
Characteristic	Instances of this are used to describe other entities.

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.expression.geo

Class	Description
DatabaseEntry	A reference to a record in a database.

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.expression.geo.model

Class	Description
Characteristic	Instances of this are used to describe other entities.

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.expression.singleCell

Class	Description
Characteristic	Instances of this are used to describe other entities.

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.genome

Class	Description
ExternalDatabase

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.genome.gene.ncbi

Class	Description
ExternalDatabase

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.loader.util

Class	Description
DatabaseEntry	A reference to a record in a database.
DatabaseEntryValueObject	ValueObject for database entry
ExternalDatabase

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.ontology

Class	Description
Characteristic	Instances of this are used to describe other entities.
CharacteristicValueObject	Value object representation of a Characteristic.

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.ontology.providers

Class	Description
Characteristic	Instances of this are used to describe other entities.

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.search

Class	Description
BibliographicReference

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.search.source

Class	Description
BibliographicReference

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.tasks.maintenance

Class	Description
AnnotationValueObject

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.visualization

Class	Description
Characteristic	Instances of this are used to describe other entities.

Classes in ubic.gemma.model.common.description used by ubic.gemma.core.visualization.cellbrowser

Class	Description
Category	Represents a category.
Characteristic	Instances of this are used to describe other entities.

Classes in ubic.gemma.model.common.description used by ubic.gemma.model.analysis

Class	Description
BibliographicReference
Characteristic	Instances of this are used to describe other entities.
CharacteristicValueObject	Value object representation of a Characteristic.

Classes in ubic.gemma.model.common.description used by ubic.gemma.model.analysis.expression

Class	Description
DatabaseEntry	A reference to a record in a database.

Classes in ubic.gemma.model.common.description used by ubic.gemma.model.association

Class	Description
Characteristic	Instances of this are used to describe other entities.
DatabaseEntry	A reference to a record in a database.

Classes in ubic.gemma.model.common.description used by ubic.gemma.model.blacklist

Class	Description
DatabaseEntry	A reference to a record in a database.
ExternalDatabaseValueObject

Classes in ubic.gemma.model.common.description used by ubic.gemma.model.common.description

Class	Description
BibliographicReference
BibliographicReferenceValueObject	represents a BibliographicReferenceValueObject when this value object is needed in core, the same value object exists in web
BibRefAnnotation
Category	Represents a category.
Characteristic	Instances of this are used to describe other entities.
CharacteristicValueObject	Value object representation of a Characteristic.
CitationValueObject	Represents a BibliographicReference as a citation string (which is really super light value object).
DatabaseEntry	A reference to a record in a database.
DatabaseType
ExternalDatabase
ExternalDatabaseValueObject
Keyword
MedicalSubjectHeading
Value	Represents a value.
Versioned	Interface implemented by entities that are externally versioned.

Classes in ubic.gemma.model.common.description used by ubic.gemma.model.expression.arrayDesign

Class	Description
DatabaseEntry	A reference to a record in a database.
DatabaseEntryValueObject	ValueObject for database entry
Versioned	Interface implemented by entities that are externally versioned.

Classes in ubic.gemma.model.common.description used by ubic.gemma.model.expression.bioAssay

Class	Description
Category	Represents a category.
Characteristic	Instances of this are used to describe other entities.
DatabaseEntry	A reference to a record in a database.
DatabaseEntryValueObject	ValueObject for database entry

Classes in ubic.gemma.model.common.description used by ubic.gemma.model.expression.bioAssayData

Class	Description
Characteristic	Instances of this are used to describe other entities.
CharacteristicValueObject	Value object representation of a Characteristic.

Classes in ubic.gemma.model.common.description used by ubic.gemma.model.expression.biomaterial

Class	Description
Characteristic	Instances of this are used to describe other entities.
CharacteristicValueObject	Value object representation of a Characteristic.
DatabaseEntry	A reference to a record in a database.

Classes in ubic.gemma.model.common.description used by ubic.gemma.model.expression.experiment

Class	Description
BibliographicReference
Category	Represents a category.
Characteristic	Instances of this are used to describe other entities.
CharacteristicValueObject	Value object representation of a Characteristic.
CitationValueObject	Represents a BibliographicReference as a citation string (which is really super light value object).
DatabaseEntry	A reference to a record in a database.

Classes in ubic.gemma.model.common.description used by ubic.gemma.model.genome

Class	Description
DatabaseEntry	A reference to a record in a database.
ExternalDatabase
ExternalDatabaseValueObject

Classes in ubic.gemma.model.common.description used by ubic.gemma.model.genome.biosequence

Class	Description
DatabaseEntry	A reference to a record in a database.

Classes in ubic.gemma.model.common.description used by ubic.gemma.model.genome.gene

Class	Description
BibliographicReference
Characteristic	Instances of this are used to describe other entities.
DatabaseEntry	A reference to a record in a database.
DatabaseEntryValueObject	ValueObject for database entry

Classes in ubic.gemma.model.common.description used by ubic.gemma.model.genome.sequenceAnalysis

Class	Description
DatabaseEntryValueObject	ValueObject for database entry
ExternalDatabase

Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.persister

Class	Description
DatabaseEntry	A reference to a record in a database.
ExternalDatabase

Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.service.analysis.expression

Class	Description
ExternalDatabase

Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.service.association

Class	Description
Characteristic	Instances of this are used to describe other entities.

Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.service.common.description

Class	Description
BibliographicReference
BibliographicReferenceValueObject	represents a BibliographicReferenceValueObject when this value object is needed in core, the same value object exists in web
Characteristic	Instances of this are used to describe other entities.
CharacteristicValueObject	Value object representation of a Characteristic.
DatabaseEntry	A reference to a record in a database.
DatabaseEntryValueObject	ValueObject for database entry
ExternalDatabase

Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.service.expression.biomaterial

Class	Description
Category	Represents a category.
Characteristic	Instances of this are used to describe other entities.

Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.service.expression.experiment

Class	Description
AnnotationValueObject
BibliographicReference
Category	Represents a category.
Characteristic	Instances of this are used to describe other entities.
DatabaseEntry	A reference to a record in a database.

Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.service.genome

Class	Description
ExternalDatabase

Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.service.genome.biosequence

Class	Description
DatabaseEntry	A reference to a record in a database.

Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.service.genome.gene

Class	Description
AnnotationValueObject
ExternalDatabase

Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.service.genome.sequenceAnalysis

Class	Description
AnnotationValueObject

Classes in ubic.gemma.model.common.description used by ubic.gemma.persistence.util

Class	Description
BibliographicReference
Characteristic	Instances of this are used to describe other entities.
DatabaseEntry	A reference to a record in a database.
ExternalDatabase

Classes in ubic.gemma.model.common.description used by ubic.gemma.rest

Class	Description
AnnotationValueObject
BibliographicReferenceValueObject	represents a BibliographicReferenceValueObject when this value object is needed in core, the same value object exists in web
Characteristic	Instances of this are used to describe other entities.
CharacteristicValueObject	Value object representation of a Characteristic.
ExternalDatabaseValueObject
Versioned	Interface implemented by entities that are externally versioned.

Classes in ubic.gemma.model.common.description used by ubic.gemma.rest.util.args

Class	Description
AnnotationValueObject
BibliographicReferenceValueObject	represents a BibliographicReferenceValueObject when this value object is needed in core, the same value object exists in web

Classes in ubic.gemma.model.common.description used by ubic.gemma.web.controller.common.description

Class	Description
AnnotationValueObject

Classes in ubic.gemma.model.common.description used by ubic.gemma.web.controller.common.description.bibref

Class	Description
BibliographicReferenceValueObject	represents a BibliographicReferenceValueObject when this value object is needed in core, the same value object exists in web

Classes in ubic.gemma.model.common.description used by ubic.gemma.web.controller.expression.arrayDesign

Class	Description
Versioned	Interface implemented by entities that are externally versioned.

Classes in ubic.gemma.model.common.description used by ubic.gemma.web.controller.expression.biomaterial

Class	Description
AnnotationValueObject
Characteristic	Instances of this are used to describe other entities.

Classes in ubic.gemma.model.common.description used by ubic.gemma.web.controller.expression.experiment

Class	Description
AnnotationValueObject
Characteristic	Instances of this are used to describe other entities.
CharacteristicValueObject	Value object representation of a Characteristic.

Classes in ubic.gemma.model.common.description used by ubic.gemma.web.controller.genome.gene

Class	Description
AnnotationValueObject

Classes in ubic.gemma.model.common.description used by ubic.gemma.web.taglib

Class	Description
BibliographicReference
DatabaseEntry	A reference to a record in a database.
DatabaseEntryValueObject	ValueObject for database entry

Classes in ubic.gemma.model.common.description used by ubic.gemma.web.util

Class	Description
ExternalDatabase
ExternalDatabaseValueObject