Package ubic.gemma.core.loader.expression.singleCell

@ParametersAreNonnullByDefault package ubic.gemma.core.loader.expression.singleCell

This package contains classes for loading single-cell expression data.

Author:

poirigui

Related Packages

Package	Description
ubic.gemma.core.loader.expression	This package contains interfaces and classes for loading expression data.
ubic.gemma.core.loader.expression.singleCell.metadata	This package contains classes for loading single-cell metadata such as cell type assignment and cell-level characteristics.
ubic.gemma.core.loader.expression.singleCell.transform	This package contains classes for transforming single-cell expression data.

Class	Description
AbstractAnnDataSingleCellDataLoaderConfigurer	Base class for AnnDataSingleCellDataLoader configurers.
AbstractDelegatingSingleCellDataLoader
AbstractMexSingleCellDataLoaderConfigurer
AnnDataSingleCellDataLoader	Reads single-cell vectors from the AnnData on-disk HDF5 format.
AnnDataSingleCellDataLoaderConfig	A configuration for loading single-cell data form AnnData format.
AnnDataSingleCellDataLoaderConfig.AnnDataSingleCellDataLoaderConfigBuilder<C extends AnnDataSingleCellDataLoaderConfig,B extends AnnDataSingleCellDataLoaderConfig.AnnDataSingleCellDataLoaderConfigBuilder<C,B>>
AnnDataSingleCellDataLoaderConfigurer
GenericMetadataSingleCellDataLoaderConfigurer
MexSingleCellDataLoader	Load single cell data from 10X Genomics MEX format.
MexSingleCellDataLoaderConfig
MexSingleCellDataLoaderConfig.MexSingleCellDataLoaderConfigBuilder<C extends MexSingleCellDataLoaderConfig,B extends MexSingleCellDataLoaderConfig.MexSingleCellDataLoaderConfigBuilder<C,B>>
MexSingleCellDataLoaderConfigurer	Configure a MexSingleCellDataLoader for a given directory and collection of BioAssays.
NullSingleCellDataLoader	Single-cell data loader used when no data is available.
NullSingleCellDataLoaderConfigurer
SequencingMetadataFileSingleCellDataLoader	Adapt a SequencingMetadataFileDataLoader so that it can be used as a SingleCellDataLoader.
SequencingMetadataFileSingleCellDataLoaderConfigurer
SingleCellDataLoader	Common interface for all single-cell data loaders.
SingleCellDataLoaderConfig	Basic configuration for loading single-cell data.
SingleCellDataLoaderConfig.SingleCellDataLoaderConfigBuilder<C extends SingleCellDataLoaderConfig,B extends SingleCellDataLoaderConfig.SingleCellDataLoaderConfigBuilder<C,B>>
SingleCellDataLoaderConfigurer<T extends SingleCellDataLoader>	Interface for configuring a single-cell data loader.
SingleCellDataLoaderService	High-level service for loading single-cell data.
SingleCellDataLoaderServiceImpl
SingleCellDataType	Supported single-cell data types.
TenXCellRangerUtils	Utilities for detecting 10x Cell Ranger data in GEO series and sample metadata.