Class AnnDataSingleCellDataLoaderConfigurer
java.lang.Object
ubic.gemma.core.loader.expression.singleCell.AbstractAnnDataSingleCellDataLoaderConfigurer
ubic.gemma.core.loader.expression.singleCell.AnnDataSingleCellDataLoaderConfigurer
- All Implemented Interfaces:
DataLoaderConfigurer<AnnDataSingleCellDataLoader,,SingleCellDataLoaderConfig> SingleCellDataLoaderConfigurer<AnnDataSingleCellDataLoader>
public class AnnDataSingleCellDataLoaderConfigurer
extends AbstractAnnDataSingleCellDataLoaderConfigurer
-
Field Summary
Fields inherited from class ubic.gemma.core.loader.expression.singleCell.AbstractAnnDataSingleCellDataLoaderConfigurer
CELL_ID_COLUMN_NAME_KEYWORDS -
Constructor Summary
ConstructorsConstructorDescriptionAnnDataSingleCellDataLoaderConfigurer(Path annDataFile, Collection<BioAssay> bioAssays, BioAssayMapper bioAssayMapper) -
Method Summary
Modifier and TypeMethodDescriptionAutomatically configure a loader for an AnnData file.protected booleanisSampleNameColumn(Dataframe.Column<?, String> column) Check if a given dataframe column contains sample names.Methods inherited from class ubic.gemma.core.loader.expression.singleCell.AbstractAnnDataSingleCellDataLoaderConfigurer
getUnknownCellTypeIndicator, isCellIdColumn, isCellTypeColumn, isGeneColumn, setPythonExecutable, setScratchDir
-
Constructor Details
-
AnnDataSingleCellDataLoaderConfigurer
public AnnDataSingleCellDataLoaderConfigurer(Path annDataFile, Collection<BioAssay> bioAssays, BioAssayMapper bioAssayMapper)
-
-
Method Details
-
isSampleNameColumn
Description copied from class:AbstractAnnDataSingleCellDataLoaderConfigurerCheck if a given dataframe column contains sample names.- Overrides:
isSampleNameColumnin classAbstractAnnDataSingleCellDataLoaderConfigurer
-
configureLoader
Description copied from class:AbstractAnnDataSingleCellDataLoaderConfigurerAutomatically configure a loader for an AnnData file.- Specified by:
configureLoaderin interfaceDataLoaderConfigurer<AnnDataSingleCellDataLoader,SingleCellDataLoaderConfig> - Overrides:
configureLoaderin classAbstractAnnDataSingleCellDataLoaderConfigurer
-