Package ubic.gemma.core.loader.expression.singleCell

Class MexSingleCellDataLoaderConfigurer

java.lang.Object

ubic.gemma.core.loader.expression.singleCell.AbstractMexSingleCellDataLoaderConfigurer

ubic.gemma.core.loader.expression.singleCell.MexSingleCellDataLoaderConfigurer

All Implemented Interfaces:

DataLoaderConfigurer<MexSingleCellDataLoader,SingleCellDataLoaderConfig>, SingleCellDataLoaderConfigurer<MexSingleCellDataLoader>

public class MexSingleCellDataLoaderConfigurer
extends AbstractMexSingleCellDataLoaderConfigurer

Configure a MexSingleCellDataLoader for a given directory and collection of BioAssays.

Author:

poirigui

Field Summary

Fields inherited from class ubic.gemma.core.loader.expression.singleCell.AbstractMexSingleCellDataLoaderConfigurer

log

Constructor Summary

Constructors

Constructor	Description
MexSingleCellDataLoaderConfigurer(Path mexDir, Collection<BioAssay> bioAssays, BioAssayMapper bioAssayMapper)

Method Summary

Modifier and Type	Method	Description
MexSingleCellDataLoader	configureLoader(SingleCellDataLoaderConfig config)	Create a DataLoader from the given configuration.
protected List<Path>	getSampleDirs()
protected List<String>	getSampleNames()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MexSingleCellDataLoaderConfigurer

public MexSingleCellDataLoaderConfigurer(Path mexDir,
                                         Collection<BioAssay> bioAssays,
                                         BioAssayMapper bioAssayMapper)

Method Detail

configureLoader

public MexSingleCellDataLoader configureLoader(SingleCellDataLoaderConfig config)

Description copied from interface: DataLoaderConfigurer

Create a DataLoader from the given configuration.

Specified by:

configureLoader in interface DataLoaderConfigurer<MexSingleCellDataLoader,SingleCellDataLoaderConfig>

Overrides:

configureLoader in class AbstractMexSingleCellDataLoaderConfigurer

getSampleNames

protected List<String> getSampleNames()

Specified by:

getSampleNames in class AbstractMexSingleCellDataLoaderConfigurer

getSampleDirs

protected List<Path> getSampleDirs()

Specified by:

getSampleDirs in class AbstractMexSingleCellDataLoaderConfigurer