Uses of Class
ubic.gemma.model.common.description.Category

Packages that use Category

Package	Description
ubic.gemma.model.common.description
ubic.gemma.model.expression.experiment
ubic.gemma.persistence.service.expression.experiment

Uses of Category in ubic.gemma.model.common.description

Fields in ubic.gemma.model.common.description declared as Category

Modifier and Type	Field	Description
static Category	Categories.ASSAY
static Category	Categories.BLOCK
static Category	Categories.CELL_TYPE
static Category	Categories.GENOTYPE
static Category	Categories.TIMEPOINT
static Category	Categories.TREATMENT
static Category	Categories.UNCATEGORIZED	Indicate an uncategorized term.

Methods in ubic.gemma.model.common.description with parameters of type Category

Modifier and Type	Method	Description
static boolean	CharacteristicUtils.hasCategory(Characteristic c, Category category)	Check if a given characteristics has a specific category.
static Characteristic	Characteristic.Factory.newInstance(Category category)
static Characteristic	Characteristic.Factory.newInstance(Category category, String value, String valueUri)

Uses of Category in ubic.gemma.model.expression.experiment

Fields in ubic.gemma.model.expression.experiment with type parameters of type Category

Modifier and Type	Field	Description
static List<Category>	ExperimentalDesignUtils.BATCH_FACTOR_CATEGORIES	A list of all categories considered to be batch.

Methods in ubic.gemma.model.expression.experiment with parameters of type Category

Modifier and Type	Method	Description
static ExperimentalFactor	ExperimentalFactor.Factory.newInstance(String name, FactorType factorType, Category category)

Uses of Category in ubic.gemma.persistence.service.expression.experiment

Methods in ubic.gemma.persistence.service.expression.experiment that return Category

Modifier and Type	Method	Description
Category	ExpressionExperimentDao.getCellLevelCharacteristicsCategory(CellLevelCharacteristics clc)	Obtain the category of a cell-level characteristic.
Category	ExpressionExperimentDaoImpl.getCellLevelCharacteristicsCategory(CellLevelCharacteristics clc)
Category	SingleCellExpressionExperimentService.getCellLevelCharacteristicsCategory(ExpressionExperiment ee, CellLevelCharacteristics clc)
Category	SingleCellExpressionExperimentServiceImpl.getCellLevelCharacteristicsCategory(ExpressionExperiment ee, CellLevelCharacteristics clc)

Methods in ubic.gemma.persistence.service.expression.experiment with parameters of type Category

Modifier and Type	Method	Description
List<CellLevelCharacteristics>	ExpressionExperimentDao.getCellLevelCharacteristics(ExpressionExperiment ee, Category category)	Obtain all cell-level characteristics from all single cell dimensions matching the given category.
List<CellLevelCharacteristics>	ExpressionExperimentDaoImpl.getCellLevelCharacteristics(ExpressionExperiment ee, Category category)
List<CellLevelCharacteristics>	SingleCellExpressionExperimentService.getCellLevelCharacteristics(ExpressionExperiment ee, Category category)	Obtain CLC for given category.
List<CellLevelCharacteristics>	SingleCellExpressionExperimentServiceImpl.getCellLevelCharacteristics(ExpressionExperiment ee, Category category)