Uses of Class
ubic.gemma.model.common.description.CharacteristicValueObject

Packages that use CharacteristicValueObject

Package	Description
ubic.gemma.core.ontology
ubic.gemma.model.analysis
ubic.gemma.model.common.description
ubic.gemma.model.expression.bioAssayData
ubic.gemma.model.expression.biomaterial
ubic.gemma.model.expression.experiment
ubic.gemma.persistence.service.common.description
ubic.gemma.rest
ubic.gemma.web.controller.expression.experiment

Uses of CharacteristicValueObject in ubic.gemma.core.ontology

Methods in ubic.gemma.core.ontology that return types with arguments of type CharacteristicValueObject

Modifier and Type	Method	Description
Collection<CharacteristicValueObject>	OntologyService.findExperimentsCharacteristicTags(String searchQuery, int maxResults, boolean useNeuroCartaOntology, long timeout, TimeUnit timeUnit)	Deprecated.
Collection<CharacteristicValueObject>	OntologyServiceImpl.findExperimentsCharacteristicTags(String searchQuery, int maxResults, boolean useNeuroCartaOntology, long timeout, TimeUnit timeUnit)	Using the ontology and values in the database, for a search searchQuery given by the client give an ordered list of possible choices
Collection<CharacteristicValueObject>	OntologyService.findTermsInexact(String givenQueryString, int maxResults, Taxon taxon, long timeout, TimeUnit timeUnit)	Given a search string will first look through the characteristic database for any entries that have a match.
Collection<CharacteristicValueObject>	OntologyServiceImpl.findTermsInexact(String queryString, int maxResults, Taxon taxon, long timeout, TimeUnit timeUnit)

Uses of CharacteristicValueObject in ubic.gemma.model.analysis

Methods in ubic.gemma.model.analysis that return types with arguments of type CharacteristicValueObject

Modifier and Type	Method	Description
Set<CharacteristicValueObject>	CellTypeAssignmentValueObject.getCellTypes()	A set of cell types that are assigned to individual cells.

Method parameters in ubic.gemma.model.analysis with type arguments of type CharacteristicValueObject

Modifier and Type	Method	Description
void	CellTypeAssignmentValueObject.setCellTypes(Set<CharacteristicValueObject> cellTypes)	A set of cell types that are assigned to individual cells.

Uses of CharacteristicValueObject in ubic.gemma.model.common.description

Methods in ubic.gemma.model.common.description that return types with arguments of type CharacteristicValueObject

Modifier and Type	Method	Description
static Collection<CharacteristicValueObject>	CharacteristicValueObject.characteristic2CharacteristicVO(Collection<? extends Characteristic> characteristics)

Methods in ubic.gemma.model.common.description with parameters of type CharacteristicValueObject

Modifier and Type	Method	Description
int	CharacteristicValueObject.compareTo(CharacteristicValueObject that)

Uses of CharacteristicValueObject in ubic.gemma.model.expression.bioAssayData

Methods in ubic.gemma.model.expression.bioAssayData that return types with arguments of type CharacteristicValueObject

Modifier and Type	Method	Description
Set<CharacteristicValueObject>	CellLevelCharacteristicsValueObject.getCharacteristics()

Method parameters in ubic.gemma.model.expression.bioAssayData with type arguments of type CharacteristicValueObject

Modifier and Type	Method	Description
void	CellLevelCharacteristicsValueObject.setCharacteristics(Set<CharacteristicValueObject> characteristics)

Uses of CharacteristicValueObject in ubic.gemma.model.expression.biomaterial

Methods in ubic.gemma.model.expression.biomaterial that return types with arguments of type CharacteristicValueObject

Modifier and Type	Method	Description
Collection<CharacteristicValueObject>	BioMaterialValueObject.getCharacteristics()

Method parameters in ubic.gemma.model.expression.biomaterial with type arguments of type CharacteristicValueObject

Modifier and Type	Method	Description
void	BioMaterialValueObject.setCharacteristics(Collection<CharacteristicValueObject> characteristics)

Uses of CharacteristicValueObject in ubic.gemma.model.expression.experiment

Methods in ubic.gemma.model.expression.experiment that return CharacteristicValueObject

Modifier and Type	Method	Description
CharacteristicValueObject	AbstractFactorValueValueObject.getExperimentalFactorCategory()	The experiment factor category.

Methods in ubic.gemma.model.expression.experiment that return types with arguments of type CharacteristicValueObject

Modifier and Type	Method	Description
List<CharacteristicValueObject>	AbstractFactorValueValueObject.getCharacteristics()	The characteristics associated with this factor value.
Collection<CharacteristicValueObject>	BioAssaySetValueObject.getCharacteristics()
Collection<CharacteristicValueObject>	ExpressionExperimentSubsetValueObject.getCharacteristics()
Set<CharacteristicValueObject>	ExpressionExperimentValueObject.getCharacteristics()

Methods in ubic.gemma.model.expression.experiment with parameters of type CharacteristicValueObject

Modifier and Type	Method	Description
void	AbstractFactorValueValueObject.setExperimentalFactorCategory(CharacteristicValueObject experimentalFactorCategory)	The experiment factor category.

Method parameters in ubic.gemma.model.expression.experiment with type arguments of type CharacteristicValueObject

Modifier and Type	Method	Description
void	AbstractFactorValueValueObject.setCharacteristics(List<CharacteristicValueObject> characteristics)	The characteristics associated with this factor value.
void	ExpressionExperimentSubsetValueObject.setCharacteristics(Collection<CharacteristicValueObject> characteristics)
void	ExpressionExperimentValueObject.setCharacteristics(Set<CharacteristicValueObject> characteristics)

Uses of CharacteristicValueObject in ubic.gemma.persistence.service.common.description

Methods in ubic.gemma.persistence.service.common.description that return CharacteristicValueObject

Modifier and Type	Method	Description
protected CharacteristicValueObject	CharacteristicDaoImpl.doLoadValueObject(Characteristic entity)

Uses of CharacteristicValueObject in ubic.gemma.rest

Methods in ubic.gemma.rest that return types with arguments of type CharacteristicValueObject

Modifier and Type	Method	Description
List<CharacteristicValueObject>	DatasetsWebService.FilteredAndInferredAndPaginatedResponseDataObject.getInferredTerms()
List<CharacteristicValueObject>	DatasetsWebService.QueriedAndFilteredAndInferredAndLimitedResponseDataObject.getInferredTerms()
List<CharacteristicValueObject>	DatasetsWebService.QueriedAndFilteredAndInferredAndPaginatedResponseDataObject.getInferredTerms()
List<CharacteristicValueObject>	DatasetsWebService.QueriedAndFilteredAndInferredResponseDataObject.getInferredTerms()

Uses of CharacteristicValueObject in ubic.gemma.web.controller.expression.experiment

Methods in ubic.gemma.web.controller.expression.experiment that return types with arguments of type CharacteristicValueObject

Modifier and Type	Method	Description
Collection<CharacteristicValueObject>	AnnotationController.findTerm(String givenQueryString, Long taxonId)	AJAX.
Collection<CharacteristicValueObject>	ExperimentalDesignController.getBioMaterialCharacteristicCategories(Long experimentalDesignID)	Extract just the categories from the biomaterial's characteristics.

Methods in ubic.gemma.web.controller.expression.experiment with parameters of type CharacteristicValueObject

Modifier and Type	Method	Description
void	ExperimentalDesignController.createFactorValueCharacteristic(EntityDelegator<FactorValue> e, CharacteristicValueObject cvo)	AJAX