ubic.gemma.core.analysis.singleCell (Gemma 1.32.3 API)

@ParametersAreNonnullByDefault package ubic.gemma.core.analysis.singleCell

This package contains classes for analysing single-cell expression data.

computing sparsity metrics with SingleCellSparsityMetrics
computing descriptive statistics with SingleCellDescriptive
split assays into sub-assays (and materials in sub-materials) for representing pseudo-bulks
masking cells with SingleCellMaskUtils
aggregating expression data into vectors applicable to sub-assays

Once transformed in this way, the data becomes suitable for preprocessing and analysis.

Package ubic.gemma.core.analysis.singleCell