Package ubic.gemma.core.analysis.singleCell
@ParametersAreNonnullByDefault
package ubic.gemma.core.analysis.singleCell
This package contains classes for analysing single-cell expression data.
- computing sparsity metrics with
SingleCellSparsityMetrics - computing descriptive statistics with
SingleCellDescriptive - subsetting assays into sub-assays (and materials in sub-materials) for representing pseudo-bulks
- masking cells with
SingleCellMaskUtils - aggregating expression data into vectors applicable to sub-assays
- Author:
- poirigui
-
ClassesClassDescriptionUtilities for creating, reading and writing mappings of
CellLevelCharacteristicstoExperimentalFactor.Descriptive statistics for single-cell data.Utility class for handling masks in single-cell analysis.Utilities for slicing single-cell data.Compute sparsity metrics for single-cell data.