Package ubic.gemma.model.association.phenotype

Class DifferentialExpressionEvidence

java.lang.Object

ubic.gemma.model.common.AbstractDescribable

ubic.gemma.model.common.auditAndSecurity.AbstractAuditable

ubic.gemma.model.association.phenotype.PhenotypeAssociation

ubic.gemma.model.association.phenotype.DataAnalysisEvidence

ubic.gemma.model.association.phenotype.DifferentialExpressionEvidence

All Implemented Interfaces:

gemma.gsec.model.Securable, Serializable, Auditable, Securable, Describable, Identifiable

@Deprecated
public class DifferentialExpressionEvidence
extends DataAnalysisEvidence

Deprecated.

Evidence documented by a differential expression result stored in the system

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	DifferentialExpressionEvidence.Factory	Deprecated.

Constructor Summary

Constructors

Constructor	Description
DifferentialExpressionEvidence()	Deprecated.

Method Summary

Modifier and Type	Method	Description
GeneDifferentialExpressionMetaAnalysisResult	getGeneDifferentialExpressionMetaAnalysisResult()	Deprecated.
Double	getSelectionThreshold()	Deprecated.
void	setGeneDifferentialExpressionMetaAnalysisResult(GeneDifferentialExpressionMetaAnalysisResult geneDifferentialExpressionMetaAnalysisResult)	Deprecated.
void	setSelectionThreshold(Double selectionThreshold)	Deprecated.

Methods inherited from class ubic.gemma.model.association.phenotype.PhenotypeAssociation

getAssociationType, getEvidenceCode, getEvidenceSource, getGene, getIsNegativeEvidence, getLastUpdated, getMappingType, getOriginalPhenotype, getPhenotypeAssociationPublications, getPhenotypes, getRelationship, getScore, getScoreType, getStrength, setAssociationType, setEvidenceCode, setEvidenceSource, setGene, setIsNegativeEvidence, setLastUpdated, setMappingType, setOriginalPhenotype, setPhenotypeAssociationPublications, setPhenotypes, setRelationship, setScore, setScoreType, setStrength

Methods inherited from class ubic.gemma.model.common.auditAndSecurity.AbstractAuditable

getAuditTrail, setAuditTrail

Methods inherited from class ubic.gemma.model.common.AbstractDescribable

equals, getDescription, getId, getName, hashCode, setDescription, setId, setName, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.gemma.model.common.Identifiable

getId

Methods inherited from interface gemma.gsec.model.Securable

getId

Constructor Detail

DifferentialExpressionEvidence

public DifferentialExpressionEvidence()

Deprecated.

Method Detail

getGeneDifferentialExpressionMetaAnalysisResult

public GeneDifferentialExpressionMetaAnalysisResult getGeneDifferentialExpressionMetaAnalysisResult()

Deprecated.

setGeneDifferentialExpressionMetaAnalysisResult

public void setGeneDifferentialExpressionMetaAnalysisResult(GeneDifferentialExpressionMetaAnalysisResult geneDifferentialExpressionMetaAnalysisResult)

Deprecated.

getSelectionThreshold

public Double getSelectionThreshold()

Deprecated.

Returns:

The q-value threshold that was used to select genes from the meta-analysis.

setSelectionThreshold

public void setSelectionThreshold(Double selectionThreshold)

Deprecated.