Package ubic.gemma.model.expression.arrayDesign

Enum TechnologyType

java.lang.Object

java.lang.Enum<TechnologyType>

ubic.gemma.model.expression.arrayDesign.TechnologyType

All Implemented Interfaces:

Serializable, Comparable<TechnologyType>

public enum TechnologyType
extends Enum<TechnologyType>

Enum Constant Summary

Enum Constants

Enum Constant	Description
DUALMODE	Indicates this platform can be used in either a one- or two- channel mode.
GENELIST	Indicates that this "platform" is just a list of genes (we use this for RNA-seq)
ONECOLOR	Indicates this platform uses one channel and measurements are non-ratiometric (e.g.
OTHER	We don't know
SEQUENCING	Indicate the platform is based on sequencing (e.g.
TWOCOLOR	Indicates this platform uses two channels and expression measurements are ratios.

Field Summary

Fields

Modifier and Type	Field	Description
static EnumSet<TechnologyType>	MICROARRAY	Enumeration of microarray platforms.

Method Summary

Modifier and Type	Method	Description
static TechnologyType	valueOf(String name)	Returns the enum constant of this type with the specified name.
static TechnologyType[]	values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

TWOCOLOR

public static final TechnologyType TWOCOLOR

Indicates this platform uses two channels and expression measurements are ratios.

DUALMODE

public static final TechnologyType DUALMODE

Indicates this platform can be used in either a one- or two- channel mode.

ONECOLOR

public static final TechnologyType ONECOLOR

Indicates this platform uses one channel and measurements are non-ratiometric (e.g. Affymetrix oligo arrays)

SEQUENCING

public static final TechnologyType SEQUENCING

Indicate the platform is based on sequencing (e.g. Illumina short reads, SAGE, OxfordNanopore). However, once we process RNA-seq data it ends up on a GENELIST platform.

GENELIST

public static final TechnologyType GENELIST

Indicates that this "platform" is just a list of genes (we use this for RNA-seq)

OTHER

public static final TechnologyType OTHER

We don't know

Field Detail

MICROARRAY

public static final EnumSet<TechnologyType> MICROARRAY

Enumeration of microarray platforms.

Method Detail

values

public static TechnologyType[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (TechnologyType c : TechnologyType.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static TechnologyType valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null