Package ubic.gemma.model.expression.bioAssayData

Class BulkExpressionDataVector

java.lang.Object

ubic.gemma.model.common.AbstractIdentifiable

ubic.gemma.model.expression.bioAssayData.DataVector

ubic.gemma.model.expression.bioAssayData.DesignElementDataVector

ubic.gemma.model.expression.bioAssayData.BulkExpressionDataVector

All Implemented Interfaces:

Identifiable

Direct Known Subclasses:

ProcessedExpressionDataVector, RawExpressionDataVector

public abstract class BulkExpressionDataVector
extends DesignElementDataVector

A data vector storing bulk expression data.

Author:

poirigui

Constructor Summary

Constructors

Constructor	Description
BulkExpressionDataVector()

Method Summary

Modifier and Type	Method	Description
BioAssayDimension	getBioAssayDimension()	A dimension of BioAssay the elements of this vector apply to.
abstract int[]	getNumberOfCells()	Obtain the number of cells that were used to compute each value in this data vector, or null if now known/available.
String	getOriginalDesignElement()	Bulk data vectors are never mapped from an external source, so this is always null.
void	setBioAssayDimension(BioAssayDimension bioAssayDimension)	A dimension of BioAssay the elements of this vector apply to.
abstract void	setNumberOfCells(int[] numberOfCells)
String	toString()

Methods inherited from class ubic.gemma.model.expression.bioAssayData.DesignElementDataVector

getDesignElement, hashCode, setDesignElement

Methods inherited from class ubic.gemma.model.expression.bioAssayData.DataVector

getData, getDataAsBooleans, getDataAsBuffer, getDataAsChars, getDataAsDoubleBuffer, getDataAsDoubles, getDataAsFloatBuffer, getDataAsFloats, getDataAsIntBuffer, getDataAsInts, getDataAsLongBuffer, getDataAsLongs, getDataAsObjects, getDataAsStrings, getDataAsTabbedStrings, getExpressionExperiment, getQuantitationType, setData, setDataAsBooleans, setDataAsChars, setDataAsDoubles, setDataAsFloats, setDataAsInts, setDataAsLongs, setDataAsObjects, setDataAsStrings, setDataAsTabbedStrings, setExpressionExperiment, setQuantitationType

Methods inherited from class ubic.gemma.model.common.AbstractIdentifiable

equals, getId, setId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

BulkExpressionDataVector

public BulkExpressionDataVector()

Method Details

getNumberOfCells

@Nullable
public abstract int[] getNumberOfCells()

Obtain the number of cells that were used to compute each value in this data vector, or null if now known/available.

setNumberOfCells

public abstract void setNumberOfCells(@Nullable
 int[] numberOfCells)

getOriginalDesignElement

@Nullable
public String getOriginalDesignElement()

Bulk data vectors are never mapped from an external source, so this is always null.

Specified by:

getOriginalDesignElement in class DesignElementDataVector

toString

public String toString()

Overrides:

toString in class AbstractIdentifiable

getBioAssayDimension

public BioAssayDimension getBioAssayDimension()

A dimension of BioAssay the elements of this vector apply to.

setBioAssayDimension

public void setBioAssayDimension(BioAssayDimension bioAssayDimension)

A dimension of BioAssay the elements of this vector apply to.