Package ubic.gemma.model.expression.bioAssayData

Class SingleCellDimensionUtils

java.lang.Object

ubic.gemma.model.expression.bioAssayData.SingleCellDimensionUtils

public class SingleCellDimensionUtils
extends Object

Constructor Summary

Constructors

Constructor	Description
SingleCellDimensionUtils()

Method Summary

Modifier and Type	Method	Description
static Map<BioAssay,Map<String,Integer>>	createIndex(SingleCellDimension singleCellDimension)	Create an index of bioassays to their cell IDs and their position in the bioassays.
static Map<String,Map<BioAssay,Integer>>	createReverseIndex(SingleCellDimension singleCellDimension)	Create a reverse index of cell IDs to their corresponding position in bioassays.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SingleCellDimensionUtils

public SingleCellDimensionUtils()

Method Detail

createIndex

public static Map<BioAssay,Map<String,Integer>> createIndex(SingleCellDimension singleCellDimension)

Create an index of bioassays to their cell IDs and their position in the bioassays.

This is useful for quickly finding the position of a cell ID in a corresponding SingleCellExpressionDataVector.

createReverseIndex

public static Map<String,Map<BioAssay,Integer>> createReverseIndex(SingleCellDimension singleCellDimension)

Create a reverse index of cell IDs to their corresponding position in bioassays.

This is useful to find the occurrences of a given barcode in a SingleCellExpressionDataVector.