Package ubic.gemma.model.expression.bioAssayData

Class SingleCellDimensionValueObject

java.lang.Object

ubic.gemma.model.common.IdentifiableValueObject<SingleCellDimension>

ubic.gemma.model.expression.bioAssayData.SingleCellDimensionValueObject

All Implemented Interfaces:

Serializable, Identifiable

public class SingleCellDimensionValueObject
extends IdentifiableValueObject<SingleCellDimension>

Value object for a single-cell dimension.

BioAssays are unpacked into a list of IDs. This is suitable because this object is displayed in the context of an ExpressionExperimentValueObject and its associated BioAssayValueObject.

Author:

poirigui

See Also:

• Serialized Form

Field Summary

Fields inherited from class ubic.gemma.model.common.IdentifiableValueObject

id

Constructor Summary

Constructors

Constructor	Description
SingleCellDimensionValueObject(SingleCellDimension singleCellDimension, boolean excludeBioAssayIds, boolean excludeCellTypeIds, boolean excludeCharacteristicIds)

Method Summary

Modifier and Type	Method	Description
protected boolean	canEqual(Object other)
boolean	equals(Object o)
List<Long>	getBioAssayIds()	A list of BioAssay IDs that are applicable to the cells.
List<String>	getCellIds()	Cell identifiers.
Set<CellLevelCharacteristicsValueObject>	getCellLevelCharacteristics()	All the other cell-level characteristics.
Set<CellTypeAssignmentValueObject>	getCellTypeAssignments()	All the cell type assignments.
int	getNumberOfCellIds()	Number of cells.
int	getNumberOfCells()	Deprecated. use getNumberOfCellIds() instead
int	hashCode()
void	setBioAssayIds(List<Long> bioAssayIds)	A list of BioAssay IDs that are applicable to the cells.
void	setCellIds(List<String> cellIds)	Cell identifiers.
void	setCellLevelCharacteristics(Set<CellLevelCharacteristicsValueObject> cellLevelCharacteristics)	All the other cell-level characteristics.
void	setCellTypeAssignments(Set<CellTypeAssignmentValueObject> cellTypeAssignments)	All the cell type assignments.
void	setNumberOfCellIds(int numberOfCellIds)	Number of cells.
String	toString()

Methods inherited from class ubic.gemma.model.common.IdentifiableValueObject

getId, setId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

SingleCellDimensionValueObject

public SingleCellDimensionValueObject(SingleCellDimension singleCellDimension,
 boolean excludeBioAssayIds,
 boolean excludeCellTypeIds,
 boolean excludeCharacteristicIds)

Method Details

getNumberOfCells

@Deprecated
public int getNumberOfCells()

Deprecated.

use getNumberOfCellIds() instead

getCellIds

public List<String> getCellIds()

Cell identifiers.

This may be null if cell IDs are explicitly omitted (i.e. ExpressionExperimentDao.getPreferredSingleCellDimensionWithoutCellIds(ExpressionExperiment)), in which case it will not be serialized in JSON.

getNumberOfCellIds

public int getNumberOfCellIds()

Number of cells.

This is always equal to the length of cellIds.

getBioAssayIds

public List<Long> getBioAssayIds()

A list of BioAssay IDs that are applicable to the cells.

getCellTypeAssignments

public Set<CellTypeAssignmentValueObject> getCellTypeAssignments()

All the cell type assignments.

getCellLevelCharacteristics

public Set<CellLevelCharacteristicsValueObject> getCellLevelCharacteristics()

All the other cell-level characteristics.

setCellIds

public void setCellIds(List<String> cellIds)

Cell identifiers.

This may be null if cell IDs are explicitly omitted (i.e. ExpressionExperimentDao.getPreferredSingleCellDimensionWithoutCellIds(ExpressionExperiment)), in which case it will not be serialized in JSON.

setNumberOfCellIds

public void setNumberOfCellIds(int numberOfCellIds)

Number of cells.

This is always equal to the length of cellIds.

setBioAssayIds

public void setBioAssayIds(List<Long> bioAssayIds)

A list of BioAssay IDs that are applicable to the cells.

setCellTypeAssignments

public void setCellTypeAssignments(Set<CellTypeAssignmentValueObject> cellTypeAssignments)

All the cell type assignments.

setCellLevelCharacteristics

public void setCellLevelCharacteristics(Set<CellLevelCharacteristicsValueObject> cellLevelCharacteristics)

All the other cell-level characteristics.

toString

public String toString()

Overrides:

toString in class IdentifiableValueObject<SingleCellDimension>

equals

public boolean equals(Object o)

Overrides:

equals in class IdentifiableValueObject<SingleCellDimension>

canEqual

protected boolean canEqual(Object other)

Overrides:

canEqual in class IdentifiableValueObject<SingleCellDimension>

hashCode

public int hashCode()

Overrides:

hashCode in class IdentifiableValueObject<SingleCellDimension>