Uses of Class
ubic.gemma.model.expression.bioAssayData.ExperimentExpressionLevelsValueObject
Packages that use ExperimentExpressionLevelsValueObject
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Uses of ExperimentExpressionLevelsValueObject in ubic.gemma.persistence.service.expression.bioAssayData
Methods in ubic.gemma.persistence.service.expression.bioAssayData that return types with arguments of type ExperimentExpressionLevelsValueObjectModifier and TypeMethodDescriptionProcessedExpressionDataVectorService.getExpressionLevels(Collection<ExpressionExperiment> ees, Collection<Gene> genes, boolean keepGeneNonSpecific, String consolidateMode) ProcessedExpressionDataVectorServiceImpl.getExpressionLevels(Collection<ExpressionExperiment> ees, Collection<Gene> genes, boolean keepGeneNonSpecific, String consolidateMode) ProcessedExpressionDataVectorService.getExpressionLevelsByIds(Collection<Long> datasetIds, Collection<Gene> genes, boolean keepNonSpecific, String consolidationMode) Retrieve expression levels by dataset IDs.ProcessedExpressionDataVectorServiceImpl.getExpressionLevelsByIds(Collection<Long> eeIds, Collection<Gene> genes, boolean keepGeneNonSpecific, String consolidateMode) ProcessedExpressionDataVectorService.getExpressionLevelsDiffEx(Collection<ExpressionExperiment> ees, Long diffExResultSetId, double threshold, int max, boolean keepGeneNonSpecific, String consolidateMode) ProcessedExpressionDataVectorServiceImpl.getExpressionLevelsDiffEx(Collection<ExpressionExperiment> ees, Long diffExResultSetId, double threshold, int max, boolean keepGeneNonSpecific, String consolidateMode) ProcessedExpressionDataVectorService.getExpressionLevelsPca(Collection<ExpressionExperiment> ees, int threshold, int component, boolean keepGeneNonSpecific, String consolidateMode) ProcessedExpressionDataVectorServiceImpl.getExpressionLevelsPca(Collection<ExpressionExperiment> ees, int limit, int component, boolean keepGeneNonSpecific, String consolidateMode) -
Uses of ExperimentExpressionLevelsValueObject in ubic.gemma.rest
Methods in ubic.gemma.rest that return types with arguments of type ExperimentExpressionLevelsValueObjectModifier and TypeMethodDescriptionDatasetsWebService.getDatasetsDifferentialExpression(DatasetArrayArg datasets, Long diffExSet, Double threshold, LimitArg limit, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate) Retrieves the expression levels of genes highly expressed in the given component on given datasets.DatasetsWebService.getDatasetsExpressionLevelsForGene(GeneArg<?> geneArg, QueryArg queryArg, FilterArg<ExpressionExperiment> filterArg, OffsetArg offsetArg, LimitArg limitArg, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate) Retrieve the expression levels of a given gene across all datasets.DatasetsWebService.getDatasetsExpressionLevelsForGeneInTaxon(TaxonArg<?> taxonArg, GeneArg<?> geneArg, QueryArg queryArg, FilterArg<ExpressionExperiment> filterArg, OffsetArg offsetArg, LimitArg limitArg, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate) Retrieve the expression levels of a given gene and taxon across all datasets.DatasetsWebService.getDatasetsExpressionLevelsForGenes(DatasetArrayArg datasets, GeneArrayArg genes, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate) DatasetsWebService.getDatasetsExpressionLevelsForGenesInTaxon(DatasetArrayArg datasets, TaxonArg<?> taxonArg, GeneArrayArg genes, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate) Retrieves the expression levels of given genes on given datasets.DatasetsWebService.getDatasetsExpressionPca(DatasetArrayArg datasets, Integer component, LimitArg limit, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate) Retrieves the expression levels of genes highly expressed in the given component on given datasets.