Uses of Class
ubic.gemma.model.expression.bioAssayData.ExperimentExpressionLevelsValueObject

Packages that use ExperimentExpressionLevelsValueObject

Package	Description
ubic.gemma.persistence.service.expression.bioAssayData
ubic.gemma.rest

Uses of ExperimentExpressionLevelsValueObject in ubic.gemma.persistence.service.expression.bioAssayData

Methods in ubic.gemma.persistence.service.expression.bioAssayData that return types with arguments of type ExperimentExpressionLevelsValueObject

Modifier and Type	Method	Description
List<ExperimentExpressionLevelsValueObject>	ProcessedExpressionDataVectorService.getExpressionLevels(Collection<ExpressionExperiment> ees, Collection<Gene> genes, boolean keepGeneNonSpecific, String consolidateMode)
List<ExperimentExpressionLevelsValueObject>	ProcessedExpressionDataVectorServiceImpl.getExpressionLevels(Collection<ExpressionExperiment> ees, Collection<Gene> genes, boolean keepGeneNonSpecific, String consolidateMode)
List<ExperimentExpressionLevelsValueObject>	ProcessedExpressionDataVectorService.getExpressionLevelsByIds(Collection<Long> datasetIds, Collection<Gene> genes, boolean keepNonSpecific, String consolidationMode)	Retrieve expression levels by dataset IDs.
List<ExperimentExpressionLevelsValueObject>	ProcessedExpressionDataVectorServiceImpl.getExpressionLevelsByIds(Collection<Long> eeIds, Collection<Gene> genes, boolean keepGeneNonSpecific, String consolidateMode)
List<ExperimentExpressionLevelsValueObject>	ProcessedExpressionDataVectorService.getExpressionLevelsDiffEx(Collection<ExpressionExperiment> ees, Long diffExResultSetId, double threshold, int max, boolean keepGeneNonSpecific, String consolidateMode)
List<ExperimentExpressionLevelsValueObject>	ProcessedExpressionDataVectorServiceImpl.getExpressionLevelsDiffEx(Collection<ExpressionExperiment> ees, Long diffExResultSetId, double threshold, int max, boolean keepGeneNonSpecific, String consolidateMode)
List<ExperimentExpressionLevelsValueObject>	ProcessedExpressionDataVectorService.getExpressionLevelsPca(Collection<ExpressionExperiment> ees, int threshold, int component, boolean keepGeneNonSpecific, String consolidateMode)
List<ExperimentExpressionLevelsValueObject>	ProcessedExpressionDataVectorServiceImpl.getExpressionLevelsPca(Collection<ExpressionExperiment> ees, int limit, int component, boolean keepGeneNonSpecific, String consolidateMode)

Uses of ExperimentExpressionLevelsValueObject in ubic.gemma.rest

Subclasses with type arguments of type ExperimentExpressionLevelsValueObject in ubic.gemma.rest

Modifier and Type	Class	Description
static class	DatasetsWebService.QueriedAndFilteredAndInferredAndCursorPaginatedResponseDataObjectExperimentExpressionLevelsValueObject	Cursor shape for DatasetsWebService.getDatasetsExpressionLevelsForGene(GeneArg, QueryArg, FilterArg, OffsetArg, LimitArg, Boolean, ExpLevelConsolidationArg, CursorArg, Boolean) / DatasetsWebService.getDatasetsExpressionLevelsForGeneInTaxon(TaxonArg, GeneArg, QueryArg, FilterArg, OffsetArg, LimitArg, Boolean, ExpLevelConsolidationArg, CursorArg, Boolean).
static class	DatasetsWebService.QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectExperimentExpressionLevelsValueObject	Legacy shape for DatasetsWebService.getDatasetsExpressionLevelsForGene(GeneArg, QueryArg, FilterArg, OffsetArg, LimitArg, Boolean, ExpLevelConsolidationArg, CursorArg, Boolean) / DatasetsWebService.getDatasetsExpressionLevelsForGeneInTaxon(TaxonArg, GeneArg, QueryArg, FilterArg, OffsetArg, LimitArg, Boolean, ExpLevelConsolidationArg, CursorArg, Boolean).

Methods in ubic.gemma.rest that return types with arguments of type ExperimentExpressionLevelsValueObject

Modifier and Type	Method	Description
ResponseDataObject<List<ExperimentExpressionLevelsValueObject>>	DatasetsWebService.getDatasetsDifferentialExpression(DatasetArrayArg datasets, Long diffExSet, Double threshold, LimitArg limit, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate, Boolean precise)	Retrieves the expression levels of genes highly expressed in the given component on given datasets.
ResponseDataObject<List<ExperimentExpressionLevelsValueObject>>	DatasetsWebService.getDatasetsExpressionLevelsForGenes(DatasetArrayArg datasets, GeneArrayArg genes, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate, Boolean precise)
ResponseDataObject<List<ExperimentExpressionLevelsValueObject>>	DatasetsWebService.getDatasetsExpressionLevelsForGenesInTaxon(DatasetArrayArg datasets, TaxonArg<?> taxonArg, GeneArrayArg genes, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate, Boolean precise)	Retrieves the expression levels of given genes on given datasets.
ResponseDataObject<List<ExperimentExpressionLevelsValueObject>>	DatasetsWebService.getDatasetsExpressionPca(DatasetArrayArg datasets, Integer component, LimitArg limit, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate, Boolean precise)	Retrieves the expression levels of genes highly expressed in the given component on given datasets.

Constructor parameters in ubic.gemma.rest with type arguments of type ExperimentExpressionLevelsValueObject

Modifier	Constructor	Description
	QueriedAndFilteredAndInferredAndCursorPaginatedResponseDataObjectExperimentExpressionLevelsValueObject(CursorPage<ExperimentExpressionLevelsValueObject> payload, String query, Filters filters, String[] groupBy, Collection<OntologyTerm> inferredTerms)
	QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectExperimentExpressionLevelsValueObject(Slice<ExperimentExpressionLevelsValueObject> payload, String query, Filters filters, String[] groupBy, Collection<OntologyTerm> inferredTerms)