Package ubic.gemma.model.expression.biomaterial

Class BioMaterialValueObject

java.lang.Object

ubic.gemma.model.common.IdentifiableValueObject<BioMaterial>

ubic.gemma.model.expression.biomaterial.BioMaterialValueObject

All Implemented Interfaces:

Serializable, Identifiable

public class BioMaterialValueObject
extends IdentifiableValueObject<BioMaterial>

Author:

lukem

See Also:

• Serialized Form

Field Summary

Fields inherited from class ubic.gemma.model.common.IdentifiableValueObject

id

Constructor Summary

Constructors

Constructor	Description
BioMaterialValueObject()	Required when using the class as a spring bean.
BioMaterialValueObject(Long id)
BioMaterialValueObject(BioMaterial bm)
BioMaterialValueObject(BioMaterial bm, boolean basic, boolean allFactorValuesAndCharacteristics)
BioMaterialValueObject(BioMaterial bm, BioAssay ba)

Method Summary

Modifier and Type	Method	Description
Collection<? extends IdentifiableValueObject>	getFactorValueObjects()	Deprecated. use getFactorValues()
Collection<? extends IdentifiableValueObject>	getFactorValues()
String	toString()

Methods inherited from class ubic.gemma.model.common.IdentifiableValueObject

getId, setId

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

BioMaterialValueObject

public BioMaterialValueObject()

Required when using the class as a spring bean.

BioMaterialValueObject

public BioMaterialValueObject(Long id)

BioMaterialValueObject

public BioMaterialValueObject(BioMaterial bm)

BioMaterialValueObject

public BioMaterialValueObject(BioMaterial bm,
 BioAssay ba)

BioMaterialValueObject

public BioMaterialValueObject(BioMaterial bm,
 boolean basic,
 boolean allFactorValuesAndCharacteristics)

Parameters:

basic - if true, populate fVBasicVOs instead of factorValueObjects. Note that basic FVs should be preferred for new code.

allFactorValuesAndCharacteristics - whether to include all factor values and characteristics, including those inherited from the source biomaterial, otherwise only those from the sample will be included

Method Details

getFactorValues

public Collection<? extends IdentifiableValueObject> getFactorValues()

getFactorValueObjects

@Deprecated
public Collection<? extends IdentifiableValueObject> getFactorValueObjects()

Deprecated.

use getFactorValues()

toString

public String toString()

Overrides:

toString in class IdentifiableValueObject<BioMaterial>