Uses of Class
ubic.gemma.model.genome.gene.GeneSetValueObject

Packages that use GeneSetValueObject

Package	Description
ubic.gemma.model.genome.gene
ubic.gemma.persistence.service.genome.gene

Uses of GeneSetValueObject in ubic.gemma.model.genome.gene

Subclasses of GeneSetValueObject in ubic.gemma.model.genome.gene

Modifier and Type	Class	Description
class	DatabaseBackedGeneSetValueObject
class	FreeTextGeneResultsValueObject	*
class	GOGroupValueObject
class	SessionBoundGeneSetValueObject

Methods in ubic.gemma.model.genome.gene that return types with arguments of type GeneSetValueObject

Modifier and Type	Method	Description
Collection<GeneSetValueObject>	GeneValueObject.getGeneSets()	Gene sets this gene belongs to, in their light form (no members).

Method parameters in ubic.gemma.model.genome.gene with type arguments of type GeneSetValueObject

Modifier and Type	Method	Description
void	GeneValueObject.setGeneSets(Collection<GeneSetValueObject> geneSets)	Gene sets this gene belongs to, in their light form (no members).

Uses of GeneSetValueObject in ubic.gemma.persistence.service.genome.gene

Methods in ubic.gemma.persistence.service.genome.gene that return GeneSetValueObject

Modifier and Type	Method	Description
GeneSetValueObject	GeneSetService.createDatabaseEntity(GeneSetValueObject gsvo)	create an entity in the database based on the value object parameter
GeneSetValueObject	GeneSetServiceImpl.createDatabaseEntity(GeneSetValueObject geneSetVo)

Methods in ubic.gemma.persistence.service.genome.gene that return types with arguments of type GeneSetValueObject

Modifier and Type	Method	Description
Collection<GeneSetValueObject>	GeneSetService.findGeneSetsByGene(Long geneId)	Given a Gemma Gene Id, find all the gene groups it is a member of (filtering is handled when gene sets are loaded)
Collection<GeneSetValueObject>	GeneSetServiceImpl.findGeneSetsByGene(Long geneId)
Collection<GeneSetValueObject>	GeneSetService.findGeneSetsByName(String query, Long taxonId)
Collection<GeneSetValueObject>	GeneSetServiceImpl.findGeneSetsByName(String query, Long taxonId)

Methods in ubic.gemma.persistence.service.genome.gene with parameters of type GeneSetValueObject

Modifier and Type	Method	Description
GeneSetValueObject	GeneSetService.createDatabaseEntity(GeneSetValueObject gsvo)	create an entity in the database based on the value object parameter
GeneSetValueObject	GeneSetServiceImpl.createDatabaseEntity(GeneSetValueObject geneSetVo)
Collection<Long>	GeneSetReadService.getGeneIdsInGroup(GeneSetValueObject geneSetVO)
Collection<Long>	GeneSetReadServiceImpl.getGeneIdsInGroup(GeneSetValueObject object)
Collection<Long>	GeneSetService.getGeneIdsInGroup(GeneSetValueObject geneSetVO)
Collection<Long>	GeneSetServiceImpl.getGeneIdsInGroup(GeneSetValueObject object)
Collection<GeneValueObject>	GeneSetReadService.getGenesInGroup(GeneSetValueObject object)
Collection<GeneValueObject>	GeneSetReadServiceImpl.getGenesInGroup(GeneSetValueObject object)
Collection<GeneValueObject>	GeneSetService.getGenesInGroup(GeneSetValueObject object)	Get the gene value objects for the members of the group param
Collection<GeneValueObject>	GeneSetServiceImpl.getGenesInGroup(GeneSetValueObject object)
int	GeneSetReadService.getSize(GeneSetValueObject geneSetVO)
int	GeneSetReadServiceImpl.getSize(GeneSetValueObject object)
int	GeneSetService.getSize(GeneSetValueObject geneSetVO)
int	GeneSetServiceImpl.getSize(GeneSetValueObject object)