Set<GeneEvidenceValueObject> |
PhenotypeAssociationManagerService.findCandidateGenes(EvidenceFilter evidenceFilter,
Set<String> phenotypesValuesUri) |
Deprecated.
Given set of phenotypes returns the genes that have all those phenotypes or children phenotypes
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Set<GeneEvidenceValueObject> |
PhenotypeAssociationManagerServiceImpl.findCandidateGenes(EvidenceFilter evidenceFilter,
Set<String> phenotypesValuesUri) |
Deprecated.
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Collection<EvidenceValueObject<? extends PhenotypeAssociation>> |
PhenotypeAssociationManagerService.findEvidenceByGeneId(Long geneId,
Set<String> phenotypesValuesUri,
EvidenceFilter evidenceFilter) |
Deprecated.
Return all evidence for a specific gene id with evidence flagged, indicating more information
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Collection<EvidenceValueObject<? extends PhenotypeAssociation>> |
PhenotypeAssociationManagerServiceImpl.findEvidenceByGeneId(Long geneId,
Set<String> phenotypesValuesUri,
EvidenceFilter evidenceFilter) |
Deprecated.
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Collection<TreeCharacteristicValueObject> |
PhenotypeAssociationManagerService.loadAllPhenotypesAsTree(EvidenceFilter evidenceFilter) |
Deprecated.
Same as loadAllPhenotypesByTree(EvidenceFilter), but does not flatten out the tree.
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Collection<TreeCharacteristicValueObject> |
PhenotypeAssociationManagerServiceImpl.loadAllPhenotypesAsTree(EvidenceFilter evidenceFilter) |
Deprecated.
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Collection<SimpleTreeValueObject> |
PhenotypeAssociationManagerService.loadAllPhenotypesByTree(EvidenceFilter evidenceFilter) |
Deprecated.
Loads all phenotypes in the database and counts their occurrence using the database It builds the tree using
parents of terms, and will return 3 trees representing Disease, HP and MP
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Collection<SimpleTreeValueObject> |
PhenotypeAssociationManagerServiceImpl.loadAllPhenotypesByTree(EvidenceFilter evidenceFilter) |
Deprecated.
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