Package ubic.gemma.persistence.persister

Class PersisterHelperImpl

java.lang.Object

ubic.gemma.persistence.persister.AbstractPersister

ubic.gemma.persistence.persister.CommonPersister

ubic.gemma.persistence.persister.GenomePersister

ubic.gemma.persistence.persister.ArrayDesignPersister

ubic.gemma.persistence.persister.ExpressionPersister

ubic.gemma.persistence.persister.RelationshipPersister

ubic.gemma.persistence.persister.PersisterHelperImpl

All Implemented Interfaces:

Persister, PersisterHelper

@Service
public class PersisterHelperImpl
extends RelationshipPersister
implements PersisterHelper

A service that knows how to persist Gemma-domain objects. Associations are checked and persisted in turn if needed. Where appropriate, objects are only created anew if they don't already exist in the database, according to rules documented elsewhere.

Author:

pavlidis, keshav

Nested Class Summary

Nested classes/interfaces inherited from class ubic.gemma.persistence.persister.AbstractPersister

AbstractPersister.Caches

Field Summary

Fields inherited from class ubic.gemma.persistence.persister.AbstractPersister

log, REPORT_BATCH_SIZE

Constructor Summary

Constructors

Constructor	Description
PersisterHelperImpl()

Method Summary

Modifier and Type	Method	Description
protected Object	doPersist(Object entity, AbstractPersister.Caches caches)

Methods inherited from class ubic.gemma.persistence.persister.ExpressionPersister

persist, persistExpressionExperiment, prepare

Methods inherited from class ubic.gemma.persistence.persister.GenomePersister

doPersistOrUpdate, persistBioSequence, persistGene, persistTaxon

Methods inherited from class ubic.gemma.persistence.persister.CommonPersister

fillInDatabaseEntry, persistAuditTrail, persistContact, persistExternalDatabase, persistProtocol, persistQuantitationType, persistUnit

Methods inherited from class ubic.gemma.persistence.persister.AbstractPersister

doPersist, getSessionFactory, persist, persist, persistOrUpdate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.persister.Persister

persist, persist, persistOrUpdate

Methods inherited from interface ubic.gemma.persistence.persister.PersisterHelper

persist, prepare

Constructor Details

PersisterHelperImpl

public PersisterHelperImpl()

Method Details

doPersist

protected Object doPersist(Object entity,
 AbstractPersister.Caches caches)

Overrides:

doPersist in class RelationshipPersister