Package ubic.gemma.persistence.service

Class AbstractCriteriaFilteringVoEnabledDao<O extends Identifiable,VO extends IdentifiableValueObject<O>>

java.lang.Object

ubic.gemma.persistence.service.AbstractDao<O>

ubic.gemma.persistence.service.AbstractVoEnabledDao<O,VO>

ubic.gemma.persistence.service.AbstractFilteringVoEnabledDao<O,VO>

ubic.gemma.persistence.service.AbstractCriteriaFilteringVoEnabledDao<O,VO>

All Implemented Interfaces:

org.springframework.beans.factory.InitializingBean, BaseDao<O>, BaseVoEnabledDao<O,VO>, FilteringDao<O>, FilteringVoEnabledDao<O,VO>

Direct Known Subclasses:

ExpressionAnalysisResultSetDaoImpl, QuantitationTypeDaoImpl

public abstract class AbstractCriteriaFilteringVoEnabledDao<O extends Identifiable,VO extends IdentifiableValueObject<O>>
extends AbstractFilteringVoEnabledDao<O,VO>

Partial implementation of FilteringVoEnabledDao based on the Hibernate Criteria API.

Author:

poirigui

See Also:

• to obtain org.hibernate.criterion.DetachedCriteria from a Filters.
• for utilities to include ACL constraints on the VOs at the database-level.

Nested Class Summary

Nested classes/interfaces inherited from class ubic.gemma.persistence.service.AbstractFilteringVoEnabledDao

AbstractFilteringVoEnabledDao.FilterablePropertiesConfigurer, AbstractFilteringVoEnabledDao.FilterablePropertyMeta

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractVoEnabledDao

REPORT_SLOW_QUERY_AFTER_MS

Fields inherited from class ubic.gemma.persistence.service.AbstractDao

log

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	AbstractCriteriaFilteringVoEnabledDao(Class<? extends O> elementClass, SessionFactory sessionFactory)

Method Summary

Modifier and Type	Method	Description
void	afterPropertiesSet()
long	count(Filters filters)	Count VOs matching the given filters.
protected Criteria	getFilteringCriteria(Filters filters)	Obtain a Criteria for loading VOs.
List<O>	load(Filters filters, Sort sort)	Load entities matching the given filters.
Slice<O>	load(Filters filters, Sort sort, int offset, int limit)	Load a slice of entities matching the given filters.
List<Long>	loadIds(Filters filters, Sort sort)	Load IDs of entities matching the given filters.
List<VO>	loadValueObjects(Filters filters, Sort sort)	Load VOs with minimal ordering and filtering.
Slice<VO>	loadValueObjects(Filters filters, Sort sort, int offset, int limit)	Load VOs with ordering, filtering and offset/limit.
protected AbstractFilteringVoEnabledDao.FilterablePropertyMeta.FilterablePropertyMetaBuilder	resolveFilterablePropertyMeta(String propertyName)	Obtain various meta-information used to infer what to use in a Filter or Sort.

Methods inherited from class ubic.gemma.persistence.service.AbstractFilteringVoEnabledDao

configureFilterableProperties, getFilter, getFilter, getFilter, getFilter, getFilter, getFilter, getFilterableProperties, getFilterablePropertyAllowedValues, getFilterablePropertyDescription, getFilterablePropertyMeta, getFilterablePropertyType, getSort, isFilterablePropertyDeprecated, isFilterablePropertyUsingSubquery, resolveFilterablePropertyMeta

Methods inherited from class ubic.gemma.persistence.service.AbstractVoEnabledDao

doLoadValueObject, doLoadValueObjects, loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds, postProcessValueObjects

Methods inherited from class ubic.gemma.persistence.service.AbstractDao

countAll, create, create, find, findByProperty, findByPropertyIn, findOneByProperty, findOrCreate, getBatchSize, getElementClass, getEntityName, getIdentifierPropertyName, getSessionFactory, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, streamQuery, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, find, findOrCreate, getElementClass, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, update, update

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledDao

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Constructor Details

AbstractCriteriaFilteringVoEnabledDao

protected AbstractCriteriaFilteringVoEnabledDao(Class<? extends O> elementClass,
 SessionFactory sessionFactory)

Method Details

afterPropertiesSet

public void afterPropertiesSet()

Specified by:

afterPropertiesSet in interface org.springframework.beans.factory.InitializingBean

Overrides:

afterPropertiesSet in class AbstractFilteringVoEnabledDao<O extends Identifiable,VO extends IdentifiableValueObject<O>>

getFilteringCriteria

protected Criteria getFilteringCriteria(@Nullable
 Filters filters)

Obtain a Criteria for loading VOs.

See Also:

• to obtain a org.hibernate.criterion.DetachedCriteria from a set of filter clauses.

loadIds

public List<Long> loadIds(@Nullable
 Filters filters,
 @Nullable
 Sort sort)

Description copied from interface: FilteringDao

Load IDs of entities matching the given filters.

load

public List<O> load(@Nullable
 Filters filters,
 @Nullable
 Sort sort)

Description copied from interface: FilteringDao

Load entities matching the given filters.

load

public Slice<O> load(@Nullable
 Filters filters,
 @Nullable
 Sort sort,
 int offset,
 int limit)

Description copied from interface: FilteringDao

Load a slice of entities matching the given filters.

loadValueObjects

public Slice<VO> loadValueObjects(@Nullable
 Filters filters,
 @Nullable
 Sort sort,
 int offset,
 int limit)

Description copied from interface: FilteringVoEnabledDao

Load VOs with ordering, filtering and offset/limit.

Consider using FilteringDao.getFilter(String, Filter.Operator, String) and FilteringDao.getSort(String, Sort.Direction, Sort.NullMode) to produce the filters and sort safely from user input.

Parameters:

filters - filters applied on the search. The properties mentioned in the Filter must exist and be visible to Hibernate. You can use nested properties such as "curationDetails.lastUpdated".

sort - an object property and direction to order by. This property must exist and be visible to Hibernate. You can use nested properties such as "curationDetails.lastUpdated".

offset - an offset from which entities are retrieved when sorted according to the sort argument, or 0 to ignore

limit - a limit on the number of returned results, or -1 to ignore

Returns:

a slice of the relevant data

See Also:

• FilteringDao.load(Filters, Sort, int, int)

loadValueObjects

public List<VO> loadValueObjects(@Nullable
 Filters filters,
 @Nullable
 Sort sort)

Description copied from interface: FilteringVoEnabledDao

Load VOs with minimal ordering and filtering.

Use this as an alternative to FilteringVoEnabledDao.loadValueObjects(Filters, Sort, int, int) if you do not intend to provide pagination capabilities.

See Also:

• FilteringDao.load(Filters, Sort)
• FilteringVoEnabledDao.loadValueObjects(Filters, Sort, int, int)

count

public long count(@Nullable
 Filters filters)

Description copied from interface: FilteringDao

Count VOs matching the given filters.

resolveFilterablePropertyMeta

protected AbstractFilteringVoEnabledDao.FilterablePropertyMeta.FilterablePropertyMetaBuilder resolveFilterablePropertyMeta(String propertyName)
                                                                                                                    throws IllegalArgumentException

Description copied from class: AbstractFilteringVoEnabledDao

Obtain various meta-information used to infer what to use in a Filter or Sort.

This is used by AbstractFilteringVoEnabledDao.getFilter(String, Filter.Operator, String) and FilteringDao.getSort(String, Sort.Direction, Sort.NullMode).

Overrides:

resolveFilterablePropertyMeta in class AbstractFilteringVoEnabledDao<O extends Identifiable,VO extends IdentifiableValueObject<O>>

Throws:

IllegalArgumentException - if no such propertyName exists in AbstractFilteringVoEnabledDao

See Also:

• AbstractFilteringVoEnabledDao.getFilter(String, Filter.Operator, String)
• AbstractFilteringVoEnabledDao.getFilter(String, Filter.Operator, Collection)
• FilteringDao.getSort(String, Sort.Direction, Sort.NullMode)