Package ubic.gemma.persistence.service.analysis.expression.pca

Interface PrincipalComponentAnalysisService

All Superinterfaces:

BaseImmutableService<PrincipalComponentAnalysis>, BaseReadOnlyService<PrincipalComponentAnalysis>

All Known Implementing Classes:

PrincipalComponentAnalysisServiceImpl

public interface PrincipalComponentAnalysisService
extends BaseImmutableService<PrincipalComponentAnalysis>

Author:

paul

Method Summary

Modifier and Type	Method	Description
PrincipalComponentAnalysis	create(ExpressionExperiment ee, DoubleMatrix<CompositeSequence,Integer> u, double[] eigenvalues, DoubleMatrix<Integer,BioMaterial> v, BioAssayDimension bad, int numComponentsToStore, int numLoadingsToStore)
boolean	existsByExperiment(ExpressionExperiment ee)
List<ProbeLoading>	getTopLoadedProbes(ExpressionExperiment ee, int component, int count)
PrincipalComponentAnalysis	loadForExperiment(ExpressionExperiment ee)
void	removeForExperiment(ExpressionExperiment ee)

Methods inherited from interface ubic.gemma.persistence.service.BaseImmutableService

create, create, findOrCreate, remove, remove, remove

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, find, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, streamAll, streamAll

Method Details

create

@Secured({"GROUP_USER","ACL_SECURABLE_EDIT"})
PrincipalComponentAnalysis create(ExpressionExperiment ee,
 DoubleMatrix<CompositeSequence,Integer> u,
 double[] eigenvalues,
 DoubleMatrix<Integer,BioMaterial> v,
 BioAssayDimension bad,
 int numComponentsToStore,
 int numLoadingsToStore)

getTopLoadedProbes

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","ACL_SECURABLE_READ"})
List<ProbeLoading> getTopLoadedProbes(ExpressionExperiment ee,
 int component,
 int count)

removeForExperiment

@Secured({"GROUP_USER","ACL_SECURABLE_EDIT"})
void removeForExperiment(ExpressionExperiment ee)

loadForExperiment

@Nullable
@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","ACL_SECURABLE_READ"})
PrincipalComponentAnalysis loadForExperiment(ExpressionExperiment ee)

existsByExperiment

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","ACL_SECURABLE_READ"})
boolean existsByExperiment(ExpressionExperiment ee)