Package ubic.gemma.persistence.service.blacklist

Interface BlacklistedEntityService

All Superinterfaces:

BaseImmutableService<BlacklistedEntity>, BaseReadOnlyService<BlacklistedEntity>, BaseVoEnabledService<BlacklistedEntity,BlacklistedValueObject>

All Known Implementing Classes:

BlacklistedEntityServiceImpl

public interface BlacklistedEntityService
extends BaseImmutableService<BlacklistedEntity>, BaseVoEnabledService<BlacklistedEntity,BlacklistedValueObject>

Method Summary

Modifier and Type	Method	Description
BlacklistedExperiment	blacklistExpressionExperiment(ExpressionExperiment dataset, String reason)	Blacklist a given dataset.
BlacklistedPlatform	blacklistPlatform(ArrayDesign platform, String reason)	Blacklist a given platform.
BlacklistedEntity	findByAccession(String accession)
boolean	isBlacklisted(String accession)
boolean	isBlacklisted(ArrayDesign platform)
boolean	isBlacklisted(ExpressionExperiment dataset)
int	removeAll()	Remove all blacklisted platforms and experiments.

Methods inherited from interface ubic.gemma.persistence.service.BaseImmutableService

create, create, findOrCreate, remove, remove, remove

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, find, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, streamAll, streamAll

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledService

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Method Details

isBlacklisted

boolean isBlacklisted(String accession)

See Also:

• BlacklistedEntityDao.isBlacklisted(String)

isBlacklisted

boolean isBlacklisted(ArrayDesign platform)

See Also:

• BlacklistedEntityDao.isBlacklisted(ArrayDesign)

isBlacklisted

boolean isBlacklisted(ExpressionExperiment dataset)

See Also:

• BlacklistedEntityDao.isBlacklisted(ExpressionExperiment)

findByAccession

BlacklistedEntity findByAccession(String accession)

See Also:

• BlacklistedEntityDao.findByAccession(String)

blacklistExpressionExperiment

@Secured({"GROUP_ADMIN","ACL_SECURABLE_EDIT"})
BlacklistedExperiment blacklistExpressionExperiment(ExpressionExperiment dataset,
 String reason)

Blacklist a given dataset.

Parameters:

dataset - the dataset to blacklist

reason - a reason, which must be non-empty

blacklistPlatform

@Secured({"GROUP_ADMIN","ACL_SECURABLE_EDIT"})
BlacklistedPlatform blacklistPlatform(ArrayDesign platform,
 String reason)

Blacklist a given platform.

If the platform has associated datasets, those are blacklisted as well as per blacklistExpressionExperiment(ExpressionExperiment, String). The reason will be adjusted to reflect the cascading through the platform.

Parameters:

platform - the platform to blacklist

reason - a reason, which must be non-empty

removeAll

@Secured("GROUP_ADMIN")
int removeAll()

Remove all blacklisted platforms and experiments.