Class CharacteristicDao.PriorCurationUsage

java.lang.Object

ubic.gemma.persistence.service.common.description.CharacteristicDao.PriorCurationUsage

Enclosing interface:

CharacteristicDao

public static class CharacteristicDao.PriorCurationUsage
extends Object

A term prior curators chose for some value string, and how many distinct experiments they chose it on.

Field Summary

Fields

Modifier and Type	Field	Description
final double	agreement	This term's share of every annotation made from this string, in [0, 1].
final long	experimentCount
final String	value
final String	valueUri

Constructor Summary

Constructors

Constructor	Description
PriorCurationUsage(String valueUri, String value, long experimentCount, double agreement)

Method Summary

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

valueUri

public final String valueUri

value

@Nullable
public final String value

experimentCount

public final long experimentCount

agreement

public final double agreement

This term's share of every annotation made from this string, in [0, 1].

The count alone cannot be read safely, because it does not say whether curators agreed. wild type goes to wild type genotype 1421 times against 2 for anything else — settled convention. sham goes to reference subject role 187 times and to reference substance role 28 — the same corpus, genuinely contested, and a consumer should treat the two very differently. Computed over all terms for the string, before any truncation, so it does not drift with the result cap.

Constructor Details

PriorCurationUsage

public PriorCurationUsage(String valueUri,
 @Nullable
 String value,
 long experimentCount,
 double agreement)