Package ubic.gemma.persistence.service.expression.bioAssay

Interface BioAssayDao

All Superinterfaces:

BaseDao<BioAssay>, BaseVoEnabledDao<BioAssay,BioAssayValueObject>, FilteringDao<BioAssay>, FilteringVoEnabledDao<BioAssay,BioAssayValueObject>

All Known Implementing Classes:

BioAssayDaoImpl

public interface BioAssayDao
extends FilteringVoEnabledDao<BioAssay,BioAssayValueObject>

See Also:

BioAssay

Field Summary

Fields

Modifier and Type	Field	Description
static String	OBJECT_ALIAS

Method Summary

Modifier and Type	Method	Description
Collection<BioAssayDimension>	findBioAssayDimensions(BioAssay bioAssay)
Collection<BioAssay>	findByAccession(String accession)
List<BioAssayValueObject>	loadValueObjects(Collection<BioAssay> entities, Map<Long,ArrayDesignValueObject> arrayDesignValueObjects, boolean basic)

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, find, findOrCreate, getElementClass, getIdentifierPropertyName, load, load, loadAll, loadReference, loadReference, remove, remove, remove, save, save, update, update

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledDao

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Methods inherited from interface ubic.gemma.persistence.service.FilteringDao

count, getFilter, getFilter, getFilter, getFilter, getFilterableProperties, getFilterablePropertyAllowedValues, getFilterablePropertyDescription, getFilterablePropertyIsUsingSubquery, getFilterablePropertyType, getSort, load, load, loadIds

Methods inherited from interface ubic.gemma.persistence.service.FilteringVoEnabledDao

loadValueObjects, loadValueObjects

Field Detail

OBJECT_ALIAS

static final String OBJECT_ALIAS

See Also:

Constant Field Values

Method Detail

findBioAssayDimensions

Collection<BioAssayDimension> findBioAssayDimensions(BioAssay bioAssay)

findByAccession

Collection<BioAssay> findByAccession(String accession)

loadValueObjects

List<BioAssayValueObject> loadValueObjects(Collection<BioAssay> entities,
                                           Map<Long,ArrayDesignValueObject> arrayDesignValueObjects,
                                           boolean basic)