Package ubic.gemma.persistence.service.expression.bioAssay

Interface BioAssayDao

All Superinterfaces:

BaseDao<BioAssay>, BaseVoEnabledDao<BioAssay,BioAssayValueObject>, FilteringDao<BioAssay>, FilteringVoEnabledDao<BioAssay,BioAssayValueObject>

All Known Implementing Classes:

BioAssayDaoImpl

public interface BioAssayDao
extends FilteringVoEnabledDao<BioAssay,BioAssayValueObject>

See Also:

• BioAssay

Method Summary

Modifier and Type	Method	Description
Collection<BioAssayDimension>	findBioAssayDimensions(BioAssay bioAssay)
Collection<BioAssay>	findByAccession(String accession)
BioAssay	findByShortName(String shortName)
Collection<BioAssaySet>	getBioAssaySets(BioAssay bioAssay)
List<BioAssayValueObject>	loadValueObjects(Collection<BioAssay> entities, Map<ArrayDesign,ArrayDesignValueObject> ad2vo, Map<BioAssay,BioAssay> assay2sourceAssayMap, boolean basic, boolean allFactorValues)

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, find, findOrCreate, getElementClass, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, update, update

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledDao

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Methods inherited from interface ubic.gemma.persistence.service.FilteringDao

count, getFilter, getFilter, getFilter, getFilter, getFilter, getFilter, getFilterableProperties, getFilterablePropertyAllowedValues, getFilterablePropertyDescription, getFilterablePropertyType, getSort, isFilterablePropertyDeprecated, isFilterablePropertyUsingSubquery, load, load, loadIds

Methods inherited from interface ubic.gemma.persistence.service.FilteringVoEnabledDao

loadValueObjects, loadValueObjects

Method Details

findByShortName

@Nullable
BioAssay findByShortName(String shortName)

findBioAssayDimensions

Collection<BioAssayDimension> findBioAssayDimensions(BioAssay bioAssay)

findByAccession

Collection<BioAssay> findByAccession(String accession)

getBioAssaySets

Collection<BioAssaySet> getBioAssaySets(BioAssay bioAssay)

loadValueObjects

List<BioAssayValueObject> loadValueObjects(Collection<BioAssay> entities,
 @Nullable
 Map<ArrayDesign,ArrayDesignValueObject> ad2vo,
 @Nullable
 Map<BioAssay,BioAssay> assay2sourceAssayMap,
 boolean basic,
 boolean allFactorValues)

See Also:

• BioAssayValueObject(BioAssay, Map, BioAssay, boolean, boolean)