Package ubic.gemma.persistence.service.expression.bioAssayData

Interface BioAssayDimensionService

All Superinterfaces:

BaseImmutableService<BioAssayDimension>, BaseReadOnlyService<BioAssayDimension>, BaseVoEnabledService<BioAssayDimension,BioAssayDimensionValueObject>

All Known Implementing Classes:

BioAssayDimensionServiceImpl

public interface BioAssayDimensionService
extends BaseImmutableService<BioAssayDimension>, BaseVoEnabledService<BioAssayDimension,BioAssayDimensionValueObject>

Author:

Paul

Method Summary

Modifier and Type	Method	Description
BioAssayDimension	create(BioAssayDimension bioAssayDimension)	Creates the given entity in the persistent storage.
Collection<BioAssayDimension>	findByBioAssaysContainingAll(Collection<BioAssay> bioAssays)
BioAssayDimension	findOrCreate(BioAssayDimension bioAssayDimension)	Does a search for the entity in the persistent storage, and if not found, creates it.
void	remove(BioAssayDimension bioAssayDimension)	Removes the given entity from the persistent storage.
BioAssayDimension	thaw(BioAssayDimension bioAssayDimension)	Fully thaw a dimension.
BioAssayDimension	thawLite(BioAssayDimension bioAssayDimension)	Lightly thaw a dimension.

Methods inherited from interface ubic.gemma.persistence.service.BaseImmutableService

create, remove, remove

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, find, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, streamAll, streamAll

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledService

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Method Detail

findOrCreate

@Secured("IS_AUTHENTICATED_ANONYMOUSLY")
BioAssayDimension findOrCreate(BioAssayDimension bioAssayDimension)

Description copied from interface: BaseImmutableService

Does a search for the entity in the persistent storage, and if not found, creates it.

Specified by:

findOrCreate in interface BaseImmutableService<BioAssayDimension>

Parameters:

bioAssayDimension - the entity to look for, and create if not found.

Returns:

the entity retrieved from the persistent storage, either found or created.

create

@Secured("IS_AUTHENTICATED_ANONYMOUSLY")
BioAssayDimension create(BioAssayDimension bioAssayDimension)

Description copied from interface: BaseImmutableService

Creates the given entity in the persistent storage.

Specified by:

create in interface BaseImmutableService<BioAssayDimension>

Parameters:

bioAssayDimension - the entity to be created.

Returns:

object referencing the persistent instance of the given entity.

findByBioAssaysContainingAll

@Secured("IS_AUTHENTICATED_ANONYMOUSLY")
Collection<BioAssayDimension> findByBioAssaysContainingAll(Collection<BioAssay> bioAssays)

remove

@Secured("GROUP_USER")
void remove(BioAssayDimension bioAssayDimension)

Description copied from interface: BaseImmutableService

Removes the given entity from the persistent storage.

Specified by:

remove in interface BaseImmutableService<BioAssayDimension>

Parameters:

bioAssayDimension - the entity to be removed.

thawLite

BioAssayDimension thawLite(BioAssayDimension bioAssayDimension)

Lightly thaw a dimension.

Only the collection of bioassays is thawed.

thaw

BioAssayDimension thaw(BioAssayDimension bioAssayDimension)

Fully thaw a dimension.

Each assay is thawed with Thaws.thawBioAssay(ubic.gemma.model.expression.bioAssay.BioAssay).