Package ubic.gemma.persistence.service.expression.experiment

Interface BlacklistedEntityService

All Superinterfaces:

BaseImmutableService<BlacklistedEntity>, BaseReadOnlyService<BlacklistedEntity>, BaseVoEnabledService<BlacklistedEntity,BlacklistedValueObject>

All Known Implementing Classes:

BlacklistedEntityServiceImpl

public interface BlacklistedEntityService
extends BaseImmutableService<BlacklistedEntity>, BaseVoEnabledService<BlacklistedEntity,BlacklistedValueObject>

Method Summary

Modifier and Type	Method	Description
BlacklistedExperiment	blacklistExpressionExperiment(ExpressionExperiment dataset, String reason)	Blacklist a given dataset.
BlacklistedPlatform	blacklistPlatform(ArrayDesign platform, String reason)	Blacklist a given platform.
BlacklistedEntity	findByAccession(String accession)
boolean	isBlacklisted(String accession)
boolean	isBlacklisted(ArrayDesign platform)
boolean	isBlacklisted(ExpressionExperiment dataset)
int	removeAll()	Remove all blacklisted platforms and experiments.

Methods inherited from interface ubic.gemma.persistence.service.BaseImmutableService

create, create, findOrCreate, remove, remove, remove

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, find, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledService

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Method Detail

isBlacklisted

boolean isBlacklisted(String accession)

See Also:

BlacklistedEntityDao.isBlacklisted(String)

isBlacklisted

boolean isBlacklisted(ArrayDesign platform)

See Also:

BlacklistedEntityDao.isBlacklisted(ArrayDesign)

isBlacklisted

boolean isBlacklisted(ExpressionExperiment dataset)

See Also:

BlacklistedEntityDao.isBlacklisted(ExpressionExperiment)

findByAccession

BlacklistedEntity findByAccession(String accession)

See Also:

BlacklistedEntityDao.findByAccession(String)

blacklistExpressionExperiment

@Secured({"GROUP_ADMIN","ACL_SECURABLE_EDIT"})
BlacklistedExperiment blacklistExpressionExperiment(ExpressionExperiment dataset,
                                                    String reason)

Blacklist a given dataset.

Parameters:

dataset - the dataset to blacklist

reason - a reason, which must be non-empty

blacklistPlatform

@Secured({"GROUP_ADMIN","ACL_SECURABLE_EDIT"})
BlacklistedPlatform blacklistPlatform(ArrayDesign platform,
                                      String reason)

Blacklist a given platform.

If the platform has associated datasets, those are blacklisted as well as per blacklistExpressionExperiment(ExpressionExperiment, String). The reason will be adjusted to reflect the cascading through the platform.

Parameters:

platform - the platform to blacklist

reason - a reason, which must be non-empty

removeAll

@Secured("GROUP_ADMIN")
int removeAll()

Remove all blacklisted platforms and experiments.