Hierarchy For Package ubic.gemma.persistence.service.expression.experiment

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • ubic.gemma.persistence.service.AbstractDao<T> (implements ubic.gemma.persistence.service.BaseDao<T>)
    • ubic.gemma.persistence.service.AbstractVoEnabledDao<O,VO> (implements ubic.gemma.persistence.service.BaseVoEnabledDao<O,VO>)
      • ubic.gemma.persistence.service.AbstractFilteringVoEnabledDao<O,VO> (implements ubic.gemma.persistence.service.FilteringVoEnabledDao<O,VO>, org.springframework.beans.factory.InitializingBean)
        • ubic.gemma.persistence.service.AbstractQueryFilteringVoEnabledDao<O,VO> (implements ubic.gemma.persistence.service.CachedFilteringVoEnabledDao<O,VO>)
          • ubic.gemma.persistence.service.common.auditAndSecurity.curation.AbstractCuratableDao<C,VO> (implements ubic.gemma.persistence.service.common.auditAndSecurity.curation.CuratableDao<C>)
            • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentDaoImpl (implements ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentDao)
      • ubic.gemma.persistence.service.AbstractNoopFilteringVoEnabledDao<O,VO> (implements ubic.gemma.persistence.service.FilteringVoEnabledDao<O,VO>)
        • ubic.gemma.persistence.service.expression.experiment.FactorValueDaoImpl (implements ubic.gemma.persistence.service.expression.experiment.FactorValueDao)
      • ubic.gemma.persistence.service.expression.experiment.ExperimentalFactorDaoImpl (implements ubic.gemma.persistence.service.expression.experiment.ExperimentalFactorDao)
      • ubic.gemma.persistence.service.expression.experiment.GeeqDaoImpl (implements ubic.gemma.persistence.service.expression.experiment.GeeqDao)
    • ubic.gemma.persistence.service.expression.experiment.ExperimentalDesignDaoImpl (implements ubic.gemma.persistence.service.expression.experiment.ExperimentalDesignDao)
    • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentSubSetDaoImpl (implements ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentSubSetDao)
    • ubic.gemma.persistence.service.expression.experiment.StatementDaoImpl (implements ubic.gemma.persistence.service.expression.experiment.StatementDao)
  • ubic.gemma.persistence.service.AbstractService<O> (implements ubic.gemma.persistence.service.BaseService<O>)
    • ubic.gemma.persistence.service.AbstractFilteringVoEnabledService<O,VO> (implements ubic.gemma.persistence.service.BaseService<O>, ubic.gemma.persistence.service.FilteringVoEnabledService<O,VO>)
      • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentServiceImpl (implements ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentService)
      • ubic.gemma.persistence.service.expression.experiment.FactorValueServiceImpl (implements ubic.gemma.persistence.service.expression.experiment.FactorValueService)
    • ubic.gemma.persistence.service.AbstractVoEnabledService<O,VO> (implements ubic.gemma.persistence.service.BaseVoEnabledService<O,VO>)
      • ubic.gemma.persistence.service.expression.experiment.ExperimentalFactorServiceImpl (implements ubic.gemma.persistence.service.expression.experiment.ExperimentalFactorService)
      • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentSetServiceImpl (implements ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentSetService)
      • ubic.gemma.persistence.service.expression.experiment.GeeqServiceImpl (implements ubic.gemma.persistence.service.expression.experiment.GeeqService)
    • ubic.gemma.persistence.service.expression.experiment.ExperimentalDesignServiceImpl (implements ubic.gemma.persistence.service.expression.experiment.ExperimentalDesignService)
    • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentSubSetServiceImpl (implements ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentSubSetService)
  • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentDao.Identifiers
  • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentGeoServiceImpl (implements ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentGeoService)
  • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentPrePersistServiceImpl (implements ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentPrePersistService)
  • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentSearchServiceImpl (implements ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentSearchService)
  • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentService.CharacteristicWithUsageStatisticsAndOntologyTerm
  • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentSetValueObjectHelperImpl (implements ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentSetValueObjectHelper)
  • ubic.gemma.persistence.service.expression.experiment.FactorValueDeletionImpl (implements ubic.gemma.persistence.service.expression.experiment.FactorValueDeletion)
  • ubic.gemma.persistence.service.expression.experiment.FactorValueMigratorService.Migration
  • ubic.gemma.persistence.service.expression.experiment.FactorValueMigratorService.Migration.MigrationBuilder
  • ubic.gemma.persistence.service.expression.experiment.FactorValueMigratorService.MigrationResult
  • ubic.gemma.persistence.service.expression.experiment.FactorValueMigratorServiceImpl (implements ubic.gemma.persistence.service.expression.experiment.FactorValueMigratorService)
  • ubic.gemma.persistence.service.expression.experiment.FactorValueNeedsAttentionServiceImpl (implements ubic.gemma.persistence.service.expression.experiment.FactorValueNeedsAttentionService)
  • ubic.gemma.persistence.service.expression.experiment.SingleCellExpressionExperimentService.SingleCellDimensionInitializationConfig
  • ubic.gemma.persistence.service.expression.experiment.SingleCellExpressionExperimentService.SingleCellDimensionInitializationConfig.SingleCellDimensionInitializationConfigBuilder
  • ubic.gemma.persistence.service.expression.experiment.SingleCellExpressionExperimentService.SingleCellVectorInitializationConfig
  • ubic.gemma.persistence.service.expression.experiment.SingleCellExpressionExperimentService.SingleCellVectorInitializationConfig.SingleCellVectorInitializationConfigBuilder
  • ubic.gemma.persistence.service.expression.experiment.SingleCellExpressionExperimentServiceImpl (implements ubic.gemma.persistence.service.expression.experiment.SingleCellExpressionExperimentService)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • java.lang.RuntimeException
        • ubic.gemma.persistence.service.expression.experiment.FactorValueMigratorService.MigrationFailedException

Interface Hierarchy

• ubic.gemma.persistence.service.BaseDao<T>
  • ubic.gemma.persistence.service.BaseVoEnabledDao<O,VO>
    • ubic.gemma.persistence.service.expression.experiment.ExperimentalFactorDao
    • ubic.gemma.persistence.service.FilteringVoEnabledDao<O,VO> (also extends ubic.gemma.persistence.service.FilteringDao<O>)
      • ubic.gemma.persistence.service.CachedFilteringVoEnabledDao<O,VO> (also extends ubic.gemma.persistence.service.CachedFilteringDao<O>)
        • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentDao (also extends ubic.gemma.persistence.service.BrowsingDao<T>, ubic.gemma.persistence.service.common.auditAndSecurity.curation.CuratableDao<C>)
      • ubic.gemma.persistence.service.expression.experiment.FactorValueDao
    • ubic.gemma.persistence.service.expression.experiment.GeeqDao
  • ubic.gemma.persistence.service.BrowsingDao<T>
    • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentDao (also extends ubic.gemma.persistence.service.CachedFilteringVoEnabledDao<O,VO>, ubic.gemma.persistence.service.common.auditAndSecurity.curation.CuratableDao<C>)
  • ubic.gemma.persistence.service.expression.experiment.ExperimentalDesignDao
  • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentSubSetDao
  • ubic.gemma.persistence.service.FilteringDao<O>
    • ubic.gemma.persistence.service.CachedFilteringDao<O>
      • ubic.gemma.persistence.service.CachedFilteringVoEnabledDao<O,VO> (also extends ubic.gemma.persistence.service.FilteringVoEnabledDao<O,VO>)
        • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentDao (also extends ubic.gemma.persistence.service.BrowsingDao<T>, ubic.gemma.persistence.service.common.auditAndSecurity.curation.CuratableDao<C>)
    • ubic.gemma.persistence.service.FilteringVoEnabledDao<O,VO> (also extends ubic.gemma.persistence.service.BaseVoEnabledDao<O,VO>)
      • ubic.gemma.persistence.service.CachedFilteringVoEnabledDao<O,VO> (also extends ubic.gemma.persistence.service.CachedFilteringDao<O>)
        • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentDao (also extends ubic.gemma.persistence.service.BrowsingDao<T>, ubic.gemma.persistence.service.common.auditAndSecurity.curation.CuratableDao<C>)
      • ubic.gemma.persistence.service.expression.experiment.FactorValueDao
  • ubic.gemma.persistence.service.expression.experiment.StatementDao
• ubic.gemma.persistence.service.BaseReadOnlyService<O>
  • ubic.gemma.persistence.service.BaseImmutableService<O>
    • ubic.gemma.persistence.service.BaseService<O>
      • ubic.gemma.persistence.service.expression.experiment.ExperimentalFactorService (also extends ubic.gemma.persistence.service.BaseVoEnabledService<O,VO>)
      • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentSetService (also extends ubic.gemma.persistence.service.BaseVoEnabledService<O,VO>)
      • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentSubSetService
      • ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseService<C> (also extends ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseImmutableService<C>)
        • ubic.gemma.persistence.service.expression.experiment.ExperimentalDesignService
        • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentService (also extends ubic.gemma.persistence.service.common.auditAndSecurity.SecurableFilteringVoEnabledService<C,VO>)
        • ubic.gemma.persistence.service.expression.experiment.FactorValueService (also extends ubic.gemma.persistence.service.common.auditAndSecurity.SecurableFilteringVoEnabledService<C,VO>)
    • ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseImmutableService<C> (also extends ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseReadOnlyService<C>)
      • ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseService<C> (also extends ubic.gemma.persistence.service.BaseService<O>)
        • ubic.gemma.persistence.service.expression.experiment.ExperimentalDesignService
        • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentService (also extends ubic.gemma.persistence.service.common.auditAndSecurity.SecurableFilteringVoEnabledService<C,VO>)
        • ubic.gemma.persistence.service.expression.experiment.FactorValueService (also extends ubic.gemma.persistence.service.common.auditAndSecurity.SecurableFilteringVoEnabledService<C,VO>)
  • ubic.gemma.persistence.service.BaseVoEnabledService<O,VO>
    • ubic.gemma.persistence.service.expression.experiment.ExperimentalFactorService (also extends ubic.gemma.persistence.service.BaseService<O>)
    • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentSetService (also extends ubic.gemma.persistence.service.BaseService<O>)
    • ubic.gemma.persistence.service.FilteringVoEnabledService<O,VO> (also extends ubic.gemma.persistence.service.FilteringService<O>)
      • ubic.gemma.persistence.service.common.auditAndSecurity.SecurableFilteringVoEnabledService<C,VO> (also extends ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseVoEnabledService<C,VO>)
        • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentService (also extends ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseService<C>)
        • ubic.gemma.persistence.service.expression.experiment.FactorValueService (also extends ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseService<C>)
    • ubic.gemma.persistence.service.expression.experiment.GeeqService
    • ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseVoEnabledService<C,VO> (also extends ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseReadOnlyService<C>)
      • ubic.gemma.persistence.service.common.auditAndSecurity.SecurableFilteringVoEnabledService<C,VO> (also extends ubic.gemma.persistence.service.FilteringVoEnabledService<O,VO>)
        • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentService (also extends ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseService<C>)
        • ubic.gemma.persistence.service.expression.experiment.FactorValueService (also extends ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseService<C>)
  • ubic.gemma.persistence.service.FilteringService<O>
    • ubic.gemma.persistence.service.FilteringVoEnabledService<O,VO> (also extends ubic.gemma.persistence.service.BaseVoEnabledService<O,VO>)
      • ubic.gemma.persistence.service.common.auditAndSecurity.SecurableFilteringVoEnabledService<C,VO> (also extends ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseVoEnabledService<C,VO>)
        • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentService (also extends ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseService<C>)
        • ubic.gemma.persistence.service.expression.experiment.FactorValueService (also extends ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseService<C>)
  • ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseReadOnlyService<C>
    • ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseImmutableService<C> (also extends ubic.gemma.persistence.service.BaseImmutableService<O>)
      • ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseService<C> (also extends ubic.gemma.persistence.service.BaseService<O>)
        • ubic.gemma.persistence.service.expression.experiment.ExperimentalDesignService
        • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentService (also extends ubic.gemma.persistence.service.common.auditAndSecurity.SecurableFilteringVoEnabledService<C,VO>)
        • ubic.gemma.persistence.service.expression.experiment.FactorValueService (also extends ubic.gemma.persistence.service.common.auditAndSecurity.SecurableFilteringVoEnabledService<C,VO>)
    • ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseVoEnabledService<C,VO> (also extends ubic.gemma.persistence.service.BaseVoEnabledService<O,VO>)
      • ubic.gemma.persistence.service.common.auditAndSecurity.SecurableFilteringVoEnabledService<C,VO> (also extends ubic.gemma.persistence.service.FilteringVoEnabledService<O,VO>)
        • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentService (also extends ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseService<C>)
        • ubic.gemma.persistence.service.expression.experiment.FactorValueService (also extends ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseService<C>)
• ubic.gemma.persistence.service.common.auditAndSecurity.curation.CuratableDao<C>
  • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentDao (also extends ubic.gemma.persistence.service.BrowsingDao<T>, ubic.gemma.persistence.service.CachedFilteringVoEnabledDao<O,VO>)
• ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentGeoService
• ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentPrePersistService
• ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentSearchService
• ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentSetValueObjectHelper
• ubic.gemma.persistence.service.expression.experiment.FactorValueDeletion
• ubic.gemma.persistence.service.expression.experiment.FactorValueMigratorService
• ubic.gemma.persistence.service.expression.experiment.FactorValueNeedsAttentionService
• ubic.gemma.persistence.service.expression.experiment.SingleCellExpressionExperimentService

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentMetaFileType
    • ubic.gemma.persistence.service.expression.experiment.GeeqService.ScoreMode