Package ubic.gemma.persistence.service.expression.experiment

Interface ExperimentalDesignService

All Superinterfaces:

BaseImmutableService<ExperimentalDesign>, BaseReadOnlyService<ExperimentalDesign>, BaseService<ExperimentalDesign>

All Known Implementing Classes:

ExperimentalDesignServiceImpl

public interface ExperimentalDesignService
extends BaseService<ExperimentalDesign>

Author:

kelsey

Method Summary

Modifier and Type	Method	Description
ExperimentalDesign	find(ExperimentalDesign experimentalDesign)	Does a search for the entity in the persistent storage
ExpressionExperiment	getExpressionExperiment(ExperimentalDesign experimentalDesign)	Gets the expression experiment for the specified experimental design object
ExpressionExperiment	getExpressionExperimentById(Long experimentalDesignId)	Gets the expression experiment for the specified experimental design object
ExperimentalDesign	getRandomExperimentalDesignThatNeedsAttention(ExperimentalDesign excludeDesign)	Obtain a random experimental design that needs attention.
ExperimentalDesign	load(Long id)	Loads object with given ID.
Collection<ExperimentalDesign>	loadAll()	Loads all the entities of specific type.
ExperimentalDesign	loadWithExperimentalFactors(Long id)
void	update(Collection<ExperimentalDesign> entities)	Updates all entities in the given collection in the persistent storage.
void	update(ExperimentalDesign experimentalDesign)	Updates the given entity in the persistent storage.

Methods inherited from interface ubic.gemma.persistence.service.BaseImmutableService

create, create, findOrCreate, remove, remove, remove

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, findOrFail, getElementClass, load, loadOrFail, loadOrFail, loadOrFail, loadOrFail, streamAll, streamAll

Methods inherited from interface ubic.gemma.persistence.service.BaseService

save, save

Method Detail

find

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_READ"})
ExperimentalDesign find(ExperimentalDesign experimentalDesign)

Description copied from interface: BaseReadOnlyService

Does a search for the entity in the persistent storage

Specified by:

find in interface BaseReadOnlyService<ExperimentalDesign>

Parameters:

experimentalDesign - the entity to be searched for

Returns:

the version of entity retrieved from the persistent storage, if found, otherwise null.

load

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_READ"})
ExperimentalDesign load(Long id)

Description copied from interface: BaseReadOnlyService

Loads object with given ID.

Specified by:

load in interface BaseReadOnlyService<ExperimentalDesign>

Parameters:

id - the ID of entity to be loaded.

Returns:

the entity with matching ID, or null if the entity does not exist or if the passed ID was null

loadWithExperimentalFactors

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_READ"})
ExperimentalDesign loadWithExperimentalFactors(Long id)

loadAll

@Secured("GROUP_ADMIN")
Collection<ExperimentalDesign> loadAll()

Description copied from interface: BaseReadOnlyService

Loads all the entities of specific type.

Specified by:

loadAll in interface BaseReadOnlyService<ExperimentalDesign>

Returns:

collection of all entities currently available in the persistent storage.

update

@Secured({"GROUP_USER","ACL_SECURABLE_EDIT"})
void update(Collection<ExperimentalDesign> entities)

Description copied from interface: BaseService

Updates all entities in the given collection in the persistent storage.

Specified by:

update in interface BaseService<ExperimentalDesign>

Parameters:

entities - the entities to be updated.

update

@Secured({"GROUP_USER","ACL_SECURABLE_EDIT"})
void update(ExperimentalDesign experimentalDesign)

Description copied from interface: BaseService

Updates the given entity in the persistent storage.

Specified by:

update in interface BaseService<ExperimentalDesign>

Parameters:

experimentalDesign - the entity to be updated.

getExpressionExperiment

@Nullable
@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_READ"})
ExpressionExperiment getExpressionExperiment(ExperimentalDesign experimentalDesign)

Gets the expression experiment for the specified experimental design object

Parameters:

experimentalDesign - experimental design

Returns:

experiment the given design belongs to

getExpressionExperimentById

@Nullable
@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_READ"})
ExpressionExperiment getExpressionExperimentById(Long experimentalDesignId)

Gets the expression experiment for the specified experimental design object

Parameters:

experimentalDesignId - experimental design ID

Returns:

experiment the given design belongs to

getRandomExperimentalDesignThatNeedsAttention

@Nullable
@Secured("GROUP_ADMIN")
ExperimentalDesign getRandomExperimentalDesignThatNeedsAttention(ExperimentalDesign excludeDesign)

Obtain a random experimental design that needs attention.

This operation is reserved to administrators.

See Also:

ExperimentalDesignDao.getRandomExperimentalDesignThatNeedsAttention(ExperimentalDesign)