Package ubic.gemma.persistence.service.expression.experiment

Class ExperimentalDesignServiceImpl

java.lang.Object

ubic.gemma.persistence.service.AbstractService<ExperimentalDesign>

ubic.gemma.persistence.service.expression.experiment.ExperimentalDesignServiceImpl

All Implemented Interfaces:

BaseImmutableService<ExperimentalDesign>, BaseReadOnlyService<ExperimentalDesign>, BaseService<ExperimentalDesign>, ExperimentalDesignService

@Service
public class ExperimentalDesignServiceImpl
extends AbstractService<ExperimentalDesign>
implements ExperimentalDesignService

Spring Service base class for ubic.gemma.model.expression.experiment.ExperimentalDesignService, provides access to all services and entities referenced by this service.

Author:

pavlidis, keshav

See Also:

ExperimentalDesignService

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractService

log

Constructor Summary

Constructors

Constructor	Description
ExperimentalDesignServiceImpl(ExperimentalDesignDao experimentalDesignDao)

Method Summary

Modifier and Type	Method	Description
ExpressionExperiment	getExpressionExperiment(ExperimentalDesign experimentalDesign)	Gets the expression experiment for the specified experimental design object
ExpressionExperiment	getExpressionExperimentById(Long experimentalDesignId)	Gets the expression experiment for the specified experimental design object
ExperimentalDesign	getRandomExperimentalDesignThatNeedsAttention(ExperimentalDesign excludedDesign)	Obtain a random experimental design that needs attention.
ExperimentalDesign	loadWithExperimentalFactors(Long id)

Methods inherited from class ubic.gemma.persistence.service.AbstractService

countAll, create, create, ensureInSession, ensureInSession, find, findOrCreate, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, remove, remove, remove, save, save, streamAll, streamAll, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.BaseImmutableService

create, create, findOrCreate, remove, remove, remove

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, findOrFail, getElementClass, load, loadOrFail, loadOrFail, loadOrFail, loadOrFail, streamAll, streamAll

Methods inherited from interface ubic.gemma.persistence.service.BaseService

save, save

Methods inherited from interface ubic.gemma.persistence.service.expression.experiment.ExperimentalDesignService

find, load, loadAll, update, update

Constructor Detail

ExperimentalDesignServiceImpl

@Autowired
public ExperimentalDesignServiceImpl(ExperimentalDesignDao experimentalDesignDao)

Method Detail

loadWithExperimentalFactors

@Transactional(readOnly=true)
public ExperimentalDesign loadWithExperimentalFactors(Long id)

Specified by:

loadWithExperimentalFactors in interface ExperimentalDesignService

getExpressionExperiment

@Transactional(readOnly=true)
public ExpressionExperiment getExpressionExperiment(ExperimentalDesign experimentalDesign)

Description copied from interface: ExperimentalDesignService

Gets the expression experiment for the specified experimental design object

Specified by:

getExpressionExperiment in interface ExperimentalDesignService

Parameters:

experimentalDesign - experimental design

Returns:

experiment the given design belongs to

getExpressionExperimentById

@Transactional(readOnly=true)
public ExpressionExperiment getExpressionExperimentById(Long experimentalDesignId)

Description copied from interface: ExperimentalDesignService

Gets the expression experiment for the specified experimental design object

Specified by:

getExpressionExperimentById in interface ExperimentalDesignService

Parameters:

experimentalDesignId - experimental design ID

Returns:

experiment the given design belongs to

getRandomExperimentalDesignThatNeedsAttention

@Transactional(readOnly=true)
public ExperimentalDesign getRandomExperimentalDesignThatNeedsAttention(ExperimentalDesign excludedDesign)

Description copied from interface: ExperimentalDesignService

Obtain a random experimental design that needs attention.

This operation is reserved to administrators.

Specified by:

getRandomExperimentalDesignThatNeedsAttention in interface ExperimentalDesignService

See Also:

ExperimentalDesignDao.getRandomExperimentalDesignThatNeedsAttention(ExperimentalDesign)