Package ubic.gemma.persistence.service.expression.experiment

Class ExperimentalFactorServiceImpl

java.lang.Object

ubic.gemma.persistence.service.AbstractService<ExperimentalFactor>

ubic.gemma.persistence.service.AbstractVoEnabledService<ExperimentalFactor,ExperimentalFactorValueObject>

ubic.gemma.persistence.service.expression.experiment.ExperimentalFactorServiceImpl

All Implemented Interfaces:

BaseImmutableService<ExperimentalFactor>, BaseReadOnlyService<ExperimentalFactor>, BaseService<ExperimentalFactor>, BaseVoEnabledService<ExperimentalFactor,ExperimentalFactorValueObject>, SecurableBaseImmutableService<ExperimentalFactor>, SecurableBaseReadOnlyService<ExperimentalFactor>, SecurableBaseService<ExperimentalFactor>, SecurableBaseVoEnabledService<ExperimentalFactor,ExperimentalFactorValueObject>, ExperimentalFactorService

@Service
public class ExperimentalFactorServiceImpl
extends AbstractVoEnabledService<ExperimentalFactor,ExperimentalFactorValueObject>
implements ExperimentalFactorService

Author:

pavlidis

See Also:

• ExperimentalFactorService

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractService

log

Constructor Summary

Constructors

Constructor	Description
ExperimentalFactorServiceImpl(ExperimentalFactorDao experimentalFactorDao, DifferentialExpressionAnalysisService differentialExpressionAnalysisService, BioMaterialService bioMaterialService)

Method Summary

Modifier and Type	Method	Description
void	remove(Collection<ExperimentalFactor> experimentalFactors)
void	remove(ExperimentalFactor experimentalFactor)	Delete the factor, its associated factor values and all differential expression analyses in which it is used.
ExperimentalFactor	thaw(ExperimentalFactor ef)

Methods inherited from class ubic.gemma.persistence.service.AbstractVoEnabledService

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Methods inherited from class ubic.gemma.persistence.service.AbstractService

countAll, create, create, ensureInSession, ensureInSession, find, findOrCreate, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, save, save, streamAll, streamAll, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, getElementClass, loadOrFail, loadOrFail

Methods inherited from interface ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseImmutableService

create, create, findOrCreate

Methods inherited from interface ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseReadOnlyService

find, findOrFail, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, streamAll, streamAll

Methods inherited from interface ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseService

save, save, update, update

Methods inherited from interface ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseVoEnabledService

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Constructor Details

ExperimentalFactorServiceImpl

@Autowired
public ExperimentalFactorServiceImpl(ExperimentalFactorDao experimentalFactorDao,
 DifferentialExpressionAnalysisService differentialExpressionAnalysisService,
 BioMaterialService bioMaterialService)

Method Details

remove

@Transactional
public void remove(ExperimentalFactor experimentalFactor)

Description copied from interface: ExperimentalFactorService

Delete the factor, its associated factor values and all differential expression analyses in which it is used.

Specified by:

remove in interface BaseImmutableService<ExperimentalFactor>

Specified by:

remove in interface ExperimentalFactorService

Specified by:

remove in interface SecurableBaseImmutableService<ExperimentalFactor>

Overrides:

remove in class AbstractService<ExperimentalFactor>

Parameters:

experimentalFactor - the factor to be deleted

See Also:

• BaseDao.remove(Identifiable)

remove

@Transactional
public void remove(Collection<ExperimentalFactor> experimentalFactors)

Specified by:

remove in interface BaseImmutableService<ExperimentalFactor>

Specified by:

remove in interface SecurableBaseImmutableService<ExperimentalFactor>

Overrides:

remove in class AbstractService<ExperimentalFactor>

See Also:

• BaseDao.remove(Collection)

thaw

@Transactional(readOnly=true)
public ExperimentalFactor thaw(ExperimentalFactor ef)

Specified by:

thaw in interface ExperimentalFactorService