Package ubic.gemma.persistence.service.expression.experiment

Class ExperimentalFactorServiceImpl

java.lang.Object

ubic.gemma.persistence.service.AbstractService<O>

ubic.gemma.persistence.service.AbstractVoEnabledService<ExperimentalFactor,ExperimentalFactorValueObject>

ubic.gemma.persistence.service.expression.experiment.ExperimentalFactorServiceImpl

All Implemented Interfaces:

BaseImmutableService<ExperimentalFactor>, BaseReadOnlyService<ExperimentalFactor>, BaseService<ExperimentalFactor>, BaseVoEnabledService<ExperimentalFactor,ExperimentalFactorValueObject>, ExperimentalFactorService

@Service
public class ExperimentalFactorServiceImpl
extends AbstractVoEnabledService<ExperimentalFactor,ExperimentalFactorValueObject>
implements ExperimentalFactorService

Author:

pavlidis

See Also:

ExperimentalFactorService

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractService

log

Fields inherited from interface ubic.gemma.persistence.service.expression.experiment.ExperimentalFactorService

BATCH_FACTOR_CATEGORY_NAME, BATCH_FACTOR_CATEGORY_URI, BATCH_FACTOR_NAME, BATCH_FACTOR_NAME_PREFIX, FACTOR_VALUE_RNAME_PREFIX

Constructor Summary

Constructors

Constructor	Description
ExperimentalFactorServiceImpl(ExperimentalFactorDao experimentalFactorDao, DifferentialExpressionAnalysisService differentialExpressionAnalysisService, BioMaterialService bioMaterialService)

Method Summary

Modifier and Type	Method	Description
void	remove(Long id)	Removes the entity with given ID from the persistent storage.
void	remove(Collection<ExperimentalFactor> experimentalFactors)	Removes all the given entities from persistent storage.
void	remove(ExperimentalFactor experimentalFactor)	Removes the given entity from the persistent storage.
ExperimentalFactor	thaw(ExperimentalFactor ef)

Methods inherited from class ubic.gemma.persistence.service.AbstractVoEnabledService

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Methods inherited from class ubic.gemma.persistence.service.AbstractService

countAll, create, create, ensureInSession, ensureInSession, find, findOrCreate, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, save, save, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.BaseImmutableService

create, create

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, findOrFail, getElementClass, loadOrFail, loadOrFail, loadOrFail, loadOrFail

Methods inherited from interface ubic.gemma.persistence.service.BaseService

save, save

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledService

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Methods inherited from interface ubic.gemma.persistence.service.expression.experiment.ExperimentalFactorService

find, findOrCreate, load, load, loadAll, update, update

Constructor Detail

ExperimentalFactorServiceImpl

@Autowired
public ExperimentalFactorServiceImpl(ExperimentalFactorDao experimentalFactorDao,
                                     DifferentialExpressionAnalysisService differentialExpressionAnalysisService,
                                     BioMaterialService bioMaterialService)

Method Detail

remove

@Transactional
public void remove(ExperimentalFactor experimentalFactor)

Description copied from interface: BaseImmutableService

Removes the given entity from the persistent storage.

Specified by:

remove in interface BaseImmutableService<ExperimentalFactor>

Specified by:

remove in interface ExperimentalFactorService

Overrides:

remove in class AbstractService<ExperimentalFactor>

Parameters:

experimentalFactor - the entity to be removed.

remove

@Transactional
public void remove(Collection<ExperimentalFactor> experimentalFactors)

Description copied from interface: BaseImmutableService

Removes all the given entities from persistent storage.

Specified by:

remove in interface BaseImmutableService<ExperimentalFactor>

Specified by:

remove in interface ExperimentalFactorService

Overrides:

remove in class AbstractService<ExperimentalFactor>

Parameters:

experimentalFactors - the entities to be removed.

remove

public void remove(Long id)

Description copied from interface: BaseImmutableService

Removes the entity with given ID from the persistent storage.

Specified by:

remove in interface BaseImmutableService<ExperimentalFactor>

Specified by:

remove in interface ExperimentalFactorService

Overrides:

remove in class AbstractService<ExperimentalFactor>

Parameters:

id - the ID of entity to be removed.

thaw

@Transactional(readOnly=true)
public ExperimentalFactor thaw(ExperimentalFactor ef)

Specified by:

thaw in interface ExperimentalFactorService