Package ubic.gemma.persistence.service.expression.experiment

Class ExperimentalDesignDaoImpl

java.lang.Object

ubic.gemma.persistence.service.AbstractDao<ExperimentalDesign>

ubic.gemma.persistence.service.expression.experiment.ExperimentalDesignDaoImpl

All Implemented Interfaces:

BaseDao<ExperimentalDesign>, ExperimentalDesignDao

@Repository
public class ExperimentalDesignDaoImpl
extends AbstractDao<ExperimentalDesign>
implements ExperimentalDesignDao

See Also:

• ExperimentalDesign

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractDao

log

Constructor Summary

Constructors

Constructor	Description
ExperimentalDesignDaoImpl(SessionFactory sessionFactory)

Method Summary

Modifier and Type	Method	Description
ExperimentalDesign	find(ExperimentalDesign experimentalDesign)	Does a look up for the given entity in the persistent storage, usually looking for a specific identifier ( either id or a string property).
ExpressionExperiment	getExpressionExperiment(ExperimentalDesign experimentalDesign)
ExpressionExperiment	getExpressionExperimentById(Long experimentalDesignId)
ExperimentalDesign	getRandomExperimentalDesignThatNeedsAttention(ExperimentalDesign excludedDesign)	Pick a random experimental design that needs attention.
ExperimentalDesign	loadWithExperimentalFactors(Long id)

Methods inherited from class ubic.gemma.persistence.service.AbstractDao

countAll, create, create, findByProperty, findByPropertyIn, findOneByProperty, findOrCreate, getBatchSize, getElementClass, getIdentifierPropertyName, getSessionFactory, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, streamQuery, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, findOrCreate, getElementClass, getIdentifierPropertyName, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, update, update

Constructor Details

ExperimentalDesignDaoImpl

@Autowired
public ExperimentalDesignDaoImpl(SessionFactory sessionFactory)

Method Details

find

public ExperimentalDesign find(ExperimentalDesign experimentalDesign)

Description copied from interface: BaseDao

Does a look up for the given entity in the persistent storage, usually looking for a specific identifier ( either id or a string property).

Specified by:

find in interface BaseDao<ExperimentalDesign>

Overrides:

find in class AbstractDao<ExperimentalDesign>

Parameters:

experimentalDesign - the entity to look for.

Returns:

an entity that was found in the persistent storage, or null if no such entity was found.

loadWithExperimentalFactors

public ExperimentalDesign loadWithExperimentalFactors(Long id)

Specified by:

loadWithExperimentalFactors in interface ExperimentalDesignDao

getExpressionExperiment

public ExpressionExperiment getExpressionExperiment(ExperimentalDesign experimentalDesign)

Specified by:

getExpressionExperiment in interface ExperimentalDesignDao

See Also:

• ExperimentalDesignDao.getExpressionExperiment(ubic.gemma.model.expression.experiment.ExperimentalDesign)

getExpressionExperimentById

public ExpressionExperiment getExpressionExperimentById(Long experimentalDesignId)

Specified by:

getExpressionExperimentById in interface ExperimentalDesignDao

getRandomExperimentalDesignThatNeedsAttention

@Nullable
public ExperimentalDesign getRandomExperimentalDesignThatNeedsAttention(ExperimentalDesign excludedDesign)

Description copied from interface: ExperimentalDesignDao

Pick a random experimental design that needs attention.

Specified by:

getRandomExperimentalDesignThatNeedsAttention in interface ExperimentalDesignDao

Parameters:

excludedDesign - an excluded design from sampling

Returns:

a random experimental design that needs attention or null if none are found