Package ubic.gemma.persistence.service.expression.experiment

Interface ExpressionExperimentSubSetDao

All Superinterfaces:

BaseDao<ExpressionExperimentSubSet>

All Known Implementing Classes:

ExpressionExperimentSubSetDaoImpl

public interface ExpressionExperimentSubSetDao
extends BaseDao<ExpressionExperimentSubSet>

See Also:

• ExpressionExperimentSubSet

Method Summary

Modifier and Type	Method	Description
Collection<ExpressionExperimentSubSet>	findByBioAssayIn(Collection<BioAssay> bioAssays)
Collection<ArrayDesign>	getArrayDesignsUsed(ExpressionExperimentSubSet subset)
Collection<FactorValue>	getFactorValuesUsed(Long subSetId, Long experimentalFactor)
Collection<FactorValue>	getFactorValuesUsed(ExpressionExperimentSubSet entity, ExperimentalFactor factor)	Obtain the FactorValue used by the samples from this subset in the given factor.
ExpressionExperimentSubSet	loadWithBioAssays(Long id)

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, find, findOrCreate, getElementClass, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, update, update

Method Details

loadWithBioAssays

@Nullable
ExpressionExperimentSubSet loadWithBioAssays(Long id)

findByBioAssayIn

Collection<ExpressionExperimentSubSet> findByBioAssayIn(Collection<BioAssay> bioAssays)

getFactorValuesUsed

Collection<FactorValue> getFactorValuesUsed(ExpressionExperimentSubSet entity,
 ExperimentalFactor factor)

Obtain the FactorValue used by the samples from this subset in the given factor.

getFactorValuesUsed

Collection<FactorValue> getFactorValuesUsed(Long subSetId,
 Long experimentalFactor)

See Also:

• getFactorValuesUsed(ExpressionExperimentSubSet, ExperimentalFactor)

getArrayDesignsUsed

Collection<ArrayDesign> getArrayDesignsUsed(ExpressionExperimentSubSet subset)