Package ubic.gemma.persistence.service.expression.experiment

Interface ExpressionExperimentSetValueObjectHelper

All Known Implementing Classes:

ExpressionExperimentSetValueObjectHelperImpl

public interface ExpressionExperimentSetValueObjectHelper

Author:

paul

Method Summary

Modifier and Type	Method	Description
ExpressionExperimentSet	convertToEntity(ExpressionExperimentSetValueObject eesvo)
ExpressionExperimentSet	create(ExpressionExperimentSetValueObject eesvo)	Create an experiment set from a VO.
void	delete(ExpressionExperimentSetValueObject eesvo)	Delete the experiment set corresponding to the given VO.
void	update(ExpressionExperimentSetValueObject eesvo)	Update corresponding entity based on value object
void	updateMembers(Long groupId, Collection<Long> eeIds)	Updates the database record for the param experiment set value object (permission permitting) with the members specified of the set, not the name or description etc.
ExpressionExperimentSetValueObject	updateNameAndDescription(ExpressionExperimentSetValueObject eeSetVO, boolean loadEEIds)	Updates the database record for the param experiment set value object (permission permitting) with the value object's name and description.

Method Detail

create

ExpressionExperimentSet create(ExpressionExperimentSetValueObject eesvo)

Create an experiment set from a VO.

The set is made public if ExpressionExperimentSetValueObject.getIsPublic() is true, otherwise it is made private.

update

void update(ExpressionExperimentSetValueObject eesvo)

Update corresponding entity based on value object

updateNameAndDescription

ExpressionExperimentSetValueObject updateNameAndDescription(ExpressionExperimentSetValueObject eeSetVO,
                                                            boolean loadEEIds)

Updates the database record for the param experiment set value object (permission permitting) with the value object's name and description.

Parameters:

loadEEIds - whether the returned value object should have the ExpressionExperimentSetValueObject.getExpressionExperimentIds() collection populated. This might be useful information, but loading the IDs takes slightly longer, so for larger amount of EE sets this might want to be avoided.

updateMembers

void updateMembers(Long groupId,
                   Collection<Long> eeIds)

Updates the database record for the param experiment set value object (permission permitting) with the members specified of the set, not the name or description etc.

delete

void delete(ExpressionExperimentSetValueObject eesvo)

Delete the experiment set corresponding to the given VO.

convertToEntity

ExpressionExperimentSet convertToEntity(ExpressionExperimentSetValueObject eesvo)