Package ubic.gemma.persistence.service.expression.experiment

Class ExpressionExperimentSearchServiceImpl

java.lang.Object

ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentSearchServiceImpl

All Implemented Interfaces:

ExpressionExperimentSearchService

@Component
public class ExpressionExperimentSearchServiceImpl
extends Object
implements ExpressionExperimentSearchService

Handles searching for experiments and experiment sets

Author:

tvrossum

Constructor Summary

Constructors

Constructor	Description
ExpressionExperimentSearchServiceImpl(ExpressionExperimentSetService expressionExperimentSetService, CoexpressionAnalysisService coexpressionAnalysisService, DifferentialExpressionAnalysisService differentialExpressionAnalysisService, gemma.gsec.SecurityService securityService, SearchService searchService, TaxonService taxonService, ExpressionExperimentService expressionExperimentService)

Method Summary

Modifier and Type	Method	Description
List<SearchResultDisplayObject>	getAllTaxonExperimentGroup(Long taxonId)
List<SearchResultDisplayObject>	searchExperimentsAndExperimentGroups(String query, Long taxonId)	does not include session bound sets
Collection<ExpressionExperimentValueObject>	searchExpressionExperiments(String query)
Collection<Long>	searchExpressionExperiments(String query, Long taxonId)
Collection<ExpressionExperimentValueObject>	searchExpressionExperiments(List<String> query)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ExpressionExperimentSearchServiceImpl

@Autowired
public ExpressionExperimentSearchServiceImpl(ExpressionExperimentSetService expressionExperimentSetService,
 CoexpressionAnalysisService coexpressionAnalysisService,
 DifferentialExpressionAnalysisService differentialExpressionAnalysisService,
 gemma.gsec.SecurityService securityService,
 SearchService searchService,
 TaxonService taxonService,
 ExpressionExperimentService expressionExperimentService)

Method Details

searchExpressionExperiments

public Collection<ExpressionExperimentValueObject> searchExpressionExperiments(String query)
                                                                        throws SearchException

Specified by:

searchExpressionExperiments in interface ExpressionExperimentSearchService

Parameters:

query - the query

Returns:

Collection of expression experiment entity objects

Throws:

SearchException

searchExpressionExperiments

public Collection<ExpressionExperimentValueObject> searchExpressionExperiments(List<String> query)
                                                                        throws SearchException

Specified by:

searchExpressionExperiments in interface ExpressionExperimentSearchService

Parameters:

query - the term values

Returns:

Collection of expression experiment VOs for EEs that are associated with all the given terms.

Throws:

SearchException

searchExperimentsAndExperimentGroups

public List<SearchResultDisplayObject> searchExperimentsAndExperimentGroups(String query,
 Long taxonId)
                                                                     throws SearchException

Description copied from interface: ExpressionExperimentSearchService

does not include session bound sets

Specified by:

searchExperimentsAndExperimentGroups in interface ExpressionExperimentSearchService

Parameters:

query - the query

taxonId - if the search should not be limited by taxon, pass in null

Returns:

Collection of SearchResultDisplayObjects

Throws:

SearchException

getAllTaxonExperimentGroup

public List<SearchResultDisplayObject> getAllTaxonExperimentGroup(Long taxonId)

Specified by:

getAllTaxonExperimentGroup in interface ExpressionExperimentSearchService

searchExpressionExperiments

@Transactional(readOnly=true)
public Collection<Long> searchExpressionExperiments(String query,
 @Nullable
 Long taxonId)
                                             throws SearchException

Specified by:

searchExpressionExperiments in interface ExpressionExperimentSearchService

Throws:

SearchException