Package ubic.gemma.persistence.service.expression.experiment

Interface ExpressionExperimentSearchService

All Known Implementing Classes:

ExpressionExperimentSearchServiceImpl

public interface ExpressionExperimentSearchService

Author:

tvrossum

Method Summary

Modifier and Type	Method	Description
List<SearchResultDisplayObject>	getAllTaxonExperimentGroup(Long taxonId)
List<SearchResultDisplayObject>	searchExperimentsAndExperimentGroups(String query, Long taxonId)	does not include session bound sets
Collection<ExpressionExperimentValueObject>	searchExpressionExperiments(String query)
Collection<Long>	searchExpressionExperiments(String query, Long taxonId)
Collection<ExpressionExperimentValueObject>	searchExpressionExperiments(List<String> value)

Method Detail

searchExpressionExperiments

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_VALUE_OBJECT_COLLECTION_READ"})
Collection<ExpressionExperimentValueObject> searchExpressionExperiments(String query)
                                                                 throws SearchException

Parameters:

query - the query

Returns:

Collection of expression experiment entity objects

Throws:

SearchException

searchExpressionExperiments

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_VALUE_OBJECT_COLLECTION_READ"})
Collection<ExpressionExperimentValueObject> searchExpressionExperiments(List<String> value)
                                                                 throws SearchException

Parameters:

value - the term values

Returns:

Collection of expression experiment VOs for EEs that are associated with all the given terms.

Throws:

SearchException

searchExpressionExperiments

@Secured("IS_AUTHENTICATED_ANONYMOUSLY")
Collection<Long> searchExpressionExperiments(String query,
                                             Long taxonId)
                                      throws SearchException

Throws:

SearchException

searchExperimentsAndExperimentGroups

List<SearchResultDisplayObject> searchExperimentsAndExperimentGroups(String query,
                                                                     @Nullable
                                                                     Long taxonId)
                                                              throws SearchException

does not include session bound sets

Parameters:

query - the query

taxonId - if the search should not be limited by taxon, pass in null

Returns:

Collection of SearchResultDisplayObjects

Throws:

SearchException

getAllTaxonExperimentGroup

List<SearchResultDisplayObject> getAllTaxonExperimentGroup(Long taxonId)